KEGG   Prevotella jejuni: CRM71_03185
Entry
CRM71_03185       CDS       T05287                                 
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
pje  Prevotella jejuni
Pathway
pje03030  DNA replication
pje03410  Base excision repair
pje03420  Nucleotide excision repair
pje03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pje00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CRM71_03185
   03410 Base excision repair
    CRM71_03185
   03420 Nucleotide excision repair
    CRM71_03185
   03430 Mismatch repair
    CRM71_03185
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pje03032]
    CRM71_03185
   03400 DNA repair and recombination proteins [BR:pje03400]
    CRM71_03185
Enzymes [BR:pje01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CRM71_03185
DNA replication proteins [BR:pje03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CRM71_03185
DNA repair and recombination proteins [BR:pje03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CRM71_03185
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CRM71_03185
   MMR (mismatch excision repair)
    DNA ligase
     CRM71_03185
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CRM71_03185
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT PTCB-BRCT HHH_2 HHH_5 BRCT_2 DNA_ligase_ZBD GCOM2
Other DBs
NCBI-ProteinID: AUI54430
UniProt: A0A2K9H735
Position
I:complement(813543..815564)
AA seq 673 aa
MNKEIQSLVDQLNAASDAYYNGRDEQMTDYEWDAAFDKLKKLEEETGIILPDSPTQNVSA
DNVAGKKEEHEFPALSLAKTKKVEDLAKWAENRPIWLSWKLDGLTLVVTYDNGKLTKVVT
RGNGHIGTNITHLSTAIDGILQTIPYKGHLVIRGEAVISYPDFEQFNMEAEEEYANPRNL
ASGSLTLKDINEVKARHLRWIPFTLVYTEEEITSWGKRMEWLEQQGFKVIDREVIEQPTV
DNIEAVIHHWTERVTGVSSSPFPYPVDGLVISYDDTVYAATGSVTGHHATRAGYAFKWQD
ESAETELDYIEWSCAASTISPVAVFRPVDLEGTTVKRASLCNISECERLGIGDKGTKIAV
IKANKIIPKVINVIESVGTFHIPETCPVCHSATEVSESEVSGTRTLHCTNTHCPAKQLKK
FGRFVSKEGVNIDGLSEQTVQKFINLGWVREYADLFHLTEHATELRTMEGFGNKSVTKLL
AAIEKARNVEARRLLFALNIPLVGQDVCNRLLSAYPLEELIKTATESAAEDVFSTIAGIG
PEKSASFVRWMKDNDNQSMLQHLLVELNVSQPSSVPTGNSCQGLTFVVTGDVHHYKNRNE
LKAYIESQGGKVTGSVSKSTNYLINNDVESTSGKNQKAKELSIPIISEDEFIVRFAQVTA
PETSSQPTEGSLF
NT seq 2022 nt   +upstreamnt  +downstreamnt
atgaacaaagaaatacaatcacttgtcgatcaacttaatgctgcatccgacgcttattac
aatggtcgtgatgaacagatgactgactatgaatgggacgcagcctttgataagttaaag
aaattagaagaagaaacaggtattatactccccgattctccaacacaaaacgtatctgcc
gataatgttgctggtaaaaaagaagaacatgagttccctgcactatccttggcaaaaact
aagaaggtagaagaccttgctaaatgggcagagaatagacctatatggctctcatggaaa
ttggacggattaacacttgttgttacatacgataatggtaaactgacaaaggttgtcaca
cgtggaaatggtcatattggcaccaatattactcatctttctacggctattgatggtatc
ttgcaaaccattccctataagggacatcttgttatccgtggtgaagctgtcatcagttat
cctgactttgagcagtttaacatggaagcagaggaagaatatgccaaccctcgcaacctc
gcatcaggctctctcacactgaaagacatcaatgaagtaaaagcccgccacttgcgttgg
attcctttcacactcgtttatacagaggaagaaataacttcttggggaaaaagaatggag
tggcttgaacaacaaggattcaaggttatagatagagaggttatcgaacagcctaccgtt
gacaatatagaagcggtcattcatcattggacagaaagagttactggtgtgagttcatca
ccattcccctaccctgttgacggcttggtaatctcatacgacgacaccgtttatgcagca
acaggttctgtcactggtcatcatgccacacgtgcaggctatgcttttaaatggcaagac
gagagtgctgaaacagaattagactatatagaatggtcatgtgctgcttcaacaatctcg
ccagtagctgtttttcgtcctgtagacttagaagggacaaccgttaaacgtgcttccctt
tgtaatatctccgaatgtgaacgattagggattggtgataagggaacgaagatagctgtt
ataaaggcgaataaaattattccgaaggttattaacgttattgaaagcgttggtactttc
catattcctgagacttgcccagtatgccattctgctacagaagttagcgaaagcgaggtt
agtggaacacgcacactacactgtaccaatacacattgtcctgctaaacagctgaagaag
tttggtagatttgtatcaaaagaaggtgtaaacattgacggactttccgagcagaccgta
cagaaatttattaaccttggctgggttcgtgaatatgccgaccttttccatcttaccgaa
catgccacagaactacgtacaatggaaggtttcggaaacaagagtgtcactaagttattg
gctgctattgaaaaagcgcgtaatgtagaagcacgtcgtctgctctttgctttaaatatt
ccccttgttggacaggatgtttgtaatcgtcttttatcagcatatccattggaggaactt
attaaaacagctacagaaagtgccgcagaagatgtattctcaaccattgctggtattgga
ccagagaagagtgcaagttttgtacgctggatgaaagataatgataatcaatcaatgcta
caacatctgttagttgagctaaacgttagtcaaccttcatcagtaccaactggtaatagt
tgtcagggattaaccttcgtcgttactggtgatgttcatcattataagaatcgtaacgaa
ctgaaagcgtacatagaaagtcaaggtggtaaggtaactggttctgtttctaaatcaacg
aattatcttattaataatgacgtagaaagtacttccggaaagaatcagaaagcaaaggaa
ctttctattcctattatctctgaagatgaattcatagttcgctttgcacaggttacagct
ccagaaacatcttcacaaccaacagaagggagtctattctaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (29)   

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