KEGG   Pseudomonas knackmussii: PKB_4271
Entry
PKB_4271          CDS       T03081                                 
Symbol
gabd5
Name
(GenBank) Succinate-semialdehyde dehydrogenase [NADP(+)] GabD
  KO
K00135  succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
Organism
pkc  Pseudomonas knackmussii
Pathway
pkc00250  Alanine, aspartate and glutamate metabolism
pkc00310  Lysine degradation
pkc00350  Tyrosine metabolism
pkc00650  Butanoate metabolism
pkc00760  Nicotinate and nicotinamide metabolism
pkc01100  Metabolic pathways
pkc01120  Microbial metabolism in diverse environments
Module
pkc_M00957  Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA
Brite
KEGG Orthology (KO) [BR:pkc00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00650 Butanoate metabolism
    PKB_4271 (gabd5)
  09105 Amino acid metabolism
   00250 Alanine, aspartate and glutamate metabolism
    PKB_4271 (gabd5)
   00310 Lysine degradation
    PKB_4271 (gabd5)
   00350 Tyrosine metabolism
    PKB_4271 (gabd5)
  09108 Metabolism of cofactors and vitamins
   00760 Nicotinate and nicotinamide metabolism
    PKB_4271 (gabd5)
Enzymes [BR:pkc01000]
 1. Oxidoreductases
  1.2  Acting on the aldehyde or oxo group of donors
   1.2.1  With NAD+ or NADP+ as acceptor
    1.2.1.16  succinate-semialdehyde dehydrogenase [NAD(P)+]
     PKB_4271 (gabd5)
    1.2.1.20  glutarate-semialdehyde dehydrogenase
     PKB_4271 (gabd5)
    1.2.1.79  succinate-semialdehyde dehydrogenase (NADP+)
     PKB_4271 (gabd5)
SSDB
Motif
Pfam: Aldedh
Other DBs
NCBI-ProteinID: CDF85596
UniProt: A0A024HL86
Position
complement(4484134..4485570)
AA seq 478 aa
MNVSYDPLYLFIGGEWISSQGRATAPVLNPATEVVIGQVPLATSADLEHALAVAQRGFEQ
WRATVPAERAKVLKRASALILERVSHIAEQMTLEEGKPIAEAVDEVTRAAEYFEWFAESA
RRIDGRVVPANRPGVLQMVKRQAIGPVAAFTPWNFPAITPARKLSAALAAGCSVILKPGE
ESPSTALALARALDDAGLPKGVLQVVFGVPDQVSSQLIASPIIRKVTFTGSVPIGRLLSA
RAAEGVKPITLELGGHGPVLVFDDADIERAAVEGVANRFRGTGQVCISSTRFLIQRGAYD
RFVQRFVAATQALRVGDGLKPDTQVGPLANARQLAKMEELVADAVAKGAQVLAGGESLPG
PGFFFAPTVLADVPMDARVMHEEPFGPIAILMPFDKLADGLREANRLPYGLSAYAFTRDA
RTAIDVADGLEAGMIGINQYRIVATELPFGGFKESGHGSEGGIEGIEHYLTHKFVSQI
NT seq 1437 nt   +upstreamnt  +downstreamnt
atgaatgtttcctacgacccgctttatcttttcatcggtggtgaatggatcagcagccag
gggcgcgcgacggcgcccgttctgaaccccgcgaccgaagtcgtaattggccaagttccg
ctcgcgacgtcggcagacctggagcacgccctggcggtggcccaacgtggtttcgagcag
tggcgcgcaactgttcccgctgagcgggcgaaggttctcaagcgggcctccgcactgatc
ctggagcgcgtctctcacatcgccgagcagatgaccctggaggaaggcaagccgatcgct
gaggccgtagacgaggtaactcgcgccgccgagtatttcgagtggttcgccgaaagcgct
cgacgcatcgatggccgagtggtgccagccaatcgccccggcgtcctacaaatggtcaag
cgccaggcgatcggtccggtggccgctttcacaccctggaactttccggctattacccct
gcacgcaagctgtctgccgcactggccgcaggctgcagcgtaatcctcaagcccggtgag
gagagcccatccacggccctcgctctggctcgtgccctggacgatgccggcctgcccaaa
ggggttctgcaggtagtgttcggggtgccggaccaggtttcgagccaactcatcgcctcg
ccgatcatccgcaaggtcacgttcaccggttcggtgcccattgggcgcctgctgtctgca
cgcgccgcagagggggtcaagccgatcaccctggagctgggcggccatggcccggtgctg
gtattcgacgacgccgatatcgagcgtgccgccgttgagggcgtcgccaaccgcttccgt
ggcaccggccaggtgtgcatttcttcgactcgattcctgatccagcggggcgcgtatgac
cgcttcgtccagcggtttgtcgccgccacccaagcactgcgggtcggcgacggcctgaag
ccggacacccaggttggaccgctcgccaatgcgcggcagctggccaagatggaggagctg
gtggccgacgcagtagctaagggcgctcaggtgctggccggtggcgaaagcttgcccggc
cccggtttcttcttcgcgccgactgtgctggccgatgtgccgatggacgcgagagtgatg
cacgaggagcccttcgggccgattgccatcctcatgccgttcgacaaactggccgacggc
ctgcgcgaggcgaatcgactgccctacgggctctccgcgtatgccttcacccgcgacgcg
cgcactgccatcgatgtcgccgacggcctggaggccgggatgatcggcatcaatcagtac
cgcatcgtagctaccgaactgccttttggcggcttcaaggaaagcggccatgggtccgaa
ggcgggatcgaaggcatcgagcactaccttacccacaagttcgtcagtcagatctga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (10)   
   KEGG PATHWAY (7)   
   KEGG MODULE (3)   
Chemical substance (10)   
   KEGG COMPOUND (10)   
Chemical reaction (6)   
   KEGG ENZYME (3)   
   KEGG REACTION (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (34)   

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