KEGG   Pseudomonas koreensis: AYO71_00685
Entry
AYO71_00685       CDS       T04647                                 
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
  KO
K11914  sigma-54 dependent transcriptional regulator
Organism
pkr  Pseudomonas koreensis
Brite
KEGG Orthology (KO) [BR:pkr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:pkr03000]
    AYO71_00685
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:pkr02044]
    AYO71_00685
Transcription factors [BR:pkr03000]
 Prokaryotic type
  Helix-turn-helix
   Other families
    AYO71_00685
Secretion system [BR:pkr02044]
 Type VI secretion system
  Imp/Vas secretion system related proteins
   AYO71_00685
SSDB
Motif
Pfam: Sigma54_activat Sigma54_activ_2 HTH_8 GAF_2 AAA_5 HTH_30 GAF HTH_50 AAA_16 AAA_2 GAF_3 AAA_7
Other DBs
NCBI-ProteinID: AMT86113
Position
161067..162587
AA seq 506 aa
MFTQVPQPLVYAEALLAQFASLSRAADSAALLGEFVRGLAELSGCELTQLYLLDATHTCL
GMNAECLDGALQPRQAASLPADYNGEQLLQFALCQNRVVCLDDLTGSLHETSFLPAASTP
WQSLLCVPLVNQHKSVEGLLLCASRRRTDLQGFADSLGQLGSFVLGQLHLLQRLRQPAAE
SASATRSVPSISGYGLIGKSAAMRQTYSLISKILHSPYTVLLRGETGTGKEVVARAIHDC
GPRRSQAFIVQNCAAFPENLLESELFGYRKGAFTGADRDRAGLFDAANGGTLLLDEIGDM
PLSLQAKILRVLQEGEIRPLGSNDTHKIDVRIIAATHRDLAALVSEGKFREDLYYRLAQF
PIELPALRQREGDILDLARHFAEKTCTFLQRDPVRWSDSALEHLCGYTFPGNVRELKALV
ERAVLLCEGGELLAEHFSLRLEPMPEDNSGLNLRERLEQVERTLLLDCLRKNDGNQTLAA
RELGLPRRTLLYRLGRLNINLGDFDG
NT seq 1521 nt   +upstreamnt  +downstreamnt
atgttcactcaagtgccgcagccactggtctatgccgaagcgttgctggcgcagttcgcc
agtctgtcgcgggcggcggacagtgctgcgctgctgggtgaattcgtccgtggcctggcc
gaactgagtggctgcgaactgacgcagctgtatctgctcgacgccacccacacctgtctg
gggatgaacgccgagtgcctcgacggtgcgctgcaaccgcgtcaggcggcgagcctgcca
gcggattacaacggcgagcaactgctgcaattcgccctgtgccagaaccgcgtggtgtgc
ctcgacgacctgaccggcagcctgcacgaaaccagttttctgccggcggcgagcacgccg
tggcagtcgctgttgtgcgtgccgctggtcaatcagcacaagtcggtcgagggcttgttg
ctgtgtgccagccgtcggcgtactgacttgcagggttttgccgattccctcggccagctc
ggctcgttcgtgctcggccaactgcatctgctgcaacgcctgcgtcagccagccgccgaa
tcggcctccgccacacgcagcgtgccgagcatcagcggctacggactgatcggcaaaagc
gcggcgatgcgccagacctattcgctgatcagcaagattcttcacagcccgtacaccgtg
ctgttgcgtggcgagaccggcaccggcaaggaagtggtggcgcgggcgatccacgattgc
ggcccgcgtcgctcccaggcgttcatcgtgcagaactgcgcggcgttcccggaaaacctg
ctggaaagcgaactgttcggctaccgcaaaggcgccttcaccggcgccgatcgagatcgc
gcagggctgttcgacgcggccaatggcggtacgctgctgctcgatgaaatcggcgacatg
ccgttgtcgctgcaagcgaagattctgcgcgtgttgcaggaaggcgagattcgtccgctg
ggttccaacgacacgcacaagatcgacgtgcgcatcatcgccgcgacgcaccgtgatctg
gcggcgctggtcagcgaaggcaagttccgcgaggacttgtactaccgcctcgcacaattc
ccgatcgagctgccggccctgcgtcagcgcgaaggcgacatcctcgatctggcccggcat
ttcgccgagaagacctgcacgtttttgcagcgtgacccggtgcgctggtcggattcggcg
ctggagcatctgtgcggttacaccttccccggcaacgttcgcgaactcaaggcactggtc
gagcgcgcggtgttgctctgcgagggtggcgagttgctcgccgagcatttttccctgcgt
ctggagccgatgcccgaagacaacagcggcctgaatctgcgcgaacgcctggagcaagtc
gagcgcactttgctcctcgattgtctgcgcaagaacgacggcaaccagaccctcgcggcc
cgcgaactgggcctgccacggcgcacgctgctgtaccgcctcgggcgcctgaatatcaat
ttgggtgactttgatggttga

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