KEGG   Pseudomonas koreensis: AYO71_27290
Entry
AYO71_27290       CDS       T04647                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
pkr  Pseudomonas koreensis
Pathway
pkr03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pkr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    AYO71_27290 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pkr03021]
    AYO71_27290 (rpoB)
   03400 DNA repair and recombination proteins [BR:pkr03400]
    AYO71_27290 (rpoB)
Enzymes [BR:pkr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     AYO71_27290 (rpoB)
Transcription machinery [BR:pkr03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     AYO71_27290 (rpoB)
DNA repair and recombination proteins [BR:pkr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      AYO71_27290 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45 7TMR-HDED
Other DBs
NCBI-ProteinID: AMT91085
Position
complement(6055955..6060028)
AA seq 1357 aa
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEEVLDAFYTTNVFHLSGET
LSLELVPSRLRGEVAVLDIQDEKGKVIVEQGRRITARHINQIEKAGIKTLDVPLDYVLGR
TTAKAIVHPATGEILAECNTELNTEVLAKIAKAQVVRIETLYTNDIDCGPFVSDTLKIDS
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE
GSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
EGVVTDEIVFLSAIEEADHVIAQASATMNEQKVLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVRKGD
RVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKSQLDE
IRKDLNEEFRIVEGATFERLRSALVGHKAEGGAGLKKGQDITDEVLDGLEHGQWFKLRMA
EDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMVEEQRKVAELRTFLDEIYNQIGGRNEDLDSFSDQEILDLANNLRGGVPMATP
VFDGAKESEIKAMLKLADLPESGQMQLTDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq 4074 nt   +upstreamnt  +downstreamnt
atggcttactcatatactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtgccttacctcctggccatccagctggattcgtatcgtgaattcttgcaa
gcgggagcgactaaagatcagttccgcgacgtgggcctgcatgcggccttcaaatccgtt
ttcccgatcatcagctactccggcaatgctgcgctggagtacgtcggttatcgcctgggc
gaaccggcatttgatgtcaaagaatgcgtattgcgcggtgtaactttcgccgtacctttg
cgggtaaaagtgcgcctgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggtgaaatccccctgatgactgagaacggtaccttc
gtaatcaacggtaccgagcgtgttatcgtttcccagctgcaccgttccccgggcgtgttc
ttcgaccacgaccgcggcaagacgcacagctccggcaaactgctgtactcggctcgcatc
attccttaccgcggttcgtggctggacttcgaattcgacccgaaagactgcgtcttcgtg
cgtatcgaccgtcgtcgcaaactgccggcttcggtactgctgcgcgcactcggttacacc
accgaagaagtgctggacgcgttctacaccaccaacgtattccacctgagcggcgaaacc
ctcagcctggaactggtgccatcgcgcctgcgtggtgaggttgcggttctggacatccag
gacgagaagggcaaggtcatcgttgagcaaggccgccgtattaccgcgcgccacatcaac
cagatcgagaaagccggtatcaagacgctggacgtgccactggactacgtcctcggccgc
accaccgccaaggctatcgtgcacccggctaccggcgaaatcctggccgaatgcaacacc
gagctgaacactgaagtcctggcaaagatcgccaaggcccaggtggttcgcatcgagacc
ctgtacaccaacgacatcgactgcggtccgttcgtctccgacacgctgaagatcgactcc
accagcaaccaattggaagcgctggtcgagatctatcgcatgatgcgtccaggcgagccg
ccaaccaaagacgctgccgagaccctgttcaacaacctgttcttcagccctgagcgttat
gacctgtctgcggtcggccggatgaagttcaaccgtcgtatcggtcgtaccgagatcgaa
ggttcgggcgtgctgtgcaaggaagacatcgtcgcggtactgaagactctggtcgacatc
cgtaacggtaaaggcatcgtcgatgacatcgaccacctgggtaaccgtcgtgttcgctgc
gtaggcgaaatggccgaaaaccagttccgcgttggcctggtacgtgttgagcgtgcggtc
aaagagcgtctgtcgatggctgaaagcgaaggcctgatgccgcaagacctgatcaacgcc
aagccagtggctgccgcggtgaaagagttcttcggttccagccagctgtcgcagttcatg
gaccagaacaacccgctgtccgagatcacccacaagcgtcgtgtctctgcactcggccct
ggcggtctgactcgtgagcgcgcaggcttcgaagtccgtgacgtacacccgactcactac
ggtcgtgtctgcccgattgaaacgccggaaggtccgaacatcggcctgatcaactccctg
gctgcgtacgctcgcaccaaccagtacggcttcctggaaagcccgtaccgcgtggtgaaa
gagggtgtggtcaccgacgagatcgtgttcctgtccgctattgaagaagccgatcacgtg
atcgcgcaggcttcggcgaccatgaacgagcagaaagtcctgatcgacgaactggttgcc
gtacgtcacctgaacgaattcaccgtcaaggcgccggaagacgtcaccctgatggacgtt
tcgccgaagcaggttgtgtcggttgcagcgtcgctgattccgttcctcgagcacgacgac
gccaaccgtgcgttgatgggttcgaacatgcagcgtcaggctgtaccgactctgcgcgct
gacaagccgctggtaggtaccggcatggagcgtaacgtagcccgtgactccggcgtttgc
gtcgtggctcgtcgtggtggcgtgatcgactccgtcgacgccagccgtatcgtggttcgt
gttgccgatgatgaagttgaaaccggtgaagccggtgtcgacatctacaacctgaccaaa
tacacccgctcgaaccagaacacctgcatcaaccagcgtccgctggtacgtaaaggtgat
cgcgttcagcgtagcgacatcatggccgacggcccgtccaccgacatgggtgagctggca
ctgggtcagaacatgcgcatcgcgttcatggcatggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgtgttgttcaggaagaccgtttcaccacgatccacattcaggaa
ctgacctgtgtggcccgtgacaccaagcttggcccagaggaaatcactgcggacatcccg
aacgtgggtgaagccgcactgaacaagctggacgaagccggtatcgtttatgtaggtgct
gaagtaggcgcaggcgacatcctggtgggtaaggtcactccgaaaggcgagacccaactg
actccggaagaaaaactgctgcgtgcaatcttcggtgaaaaagccagcgacgttaaagac
acttccctgcgtgtacctaccggtaccaaaggtactgtgatcgacgtacaggtcttcacc
cgcgacggcgttgagcgtgatgctcgtgcactgtcgatcgagaagtcccagctggacgag
atccgcaaggatctgaacgaagagttccgcatcgttgaaggcgcgactttcgaacgtctg
cgttccgcactggtaggccacaaggccgaaggcggcgccggcctgaagaaaggtcaggac
atcaccgacgaagtactcgacggtcttgagcacggccagtggttcaaactgcgcatggct
gaagatgcgctgaacgagcagctcgagaaggctcaggcctacatcgttgatcgtcgccgt
ctgctggacgacaagttcgaagacaagaagcgcaaactgcagcagggcgatgacctggct
ccaggcgtgctgaaaatcgtcaaggtttacctggcaatccgtcgccgcatccagccgggc
gacaagatggccggtcgtcacggtaacaagggtgtggtctccgtgatcatgccggttgaa
gacatgccgcacgatgccaatggcaccccggtcgacgtggtcctcaacccgctgggcgta
ccttcgcgtatgaacgttggtcagattctcgaaacccacctgggcctcgcggccaaaggt
ctgggcgagaagatcaaccggatggtcgaagagcagcgtaaagtcgctgaactgcgcact
ttcctggacgagatctacaaccagatcggcggtcgtaacgaagatctggacagcttctcc
gatcaggaaatcctcgatctggcgaacaacctgcgtggcggcgttccaatggccactcca
gtgttcgacggcgccaaggaaagcgaaatcaaggccatgctgaaactggcagacctgccg
gaaagcggccagatgcagctgaccgacggccgtaccggcaacaagttcgagcgtccagtt
accgttggctacatgtacatgctgaagctgaaccacttggtagacgacaagatgcacgcg
cgttctaccggttcttacagcctggttacccagcagccgctgggtggtaaggcgcagttc
ggtggtcagcgtttcggggagatggaggtctgggcactggaagcatacggtgctgcttac
actctgcaagaaatgctcacagtgaagtcggacgatgtgaacggccgtaccaagatgtac
aagaacatcgtggatggcgatcaccgtatggagccgggcatgcccgagtccttcaacgtg
ttgatcaaggaaattcgttccctcggcatcgatatcgatctggaaaccgaataa

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