KEGG   Paucibacter sp. KCTC 42545: AT984_02380
Entry
AT984_02380       CDS       T04227                                 
Name
(GenBank) ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
pkt  Paucibacter sp. KCTC 42545
Pathway
pkt03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pkt00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AT984_02380
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pkt03019]
    AT984_02380
   03009 Ribosome biogenesis [BR:pkt03009]
    AT984_02380
Enzymes [BR:pkt01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     AT984_02380
Messenger RNA biogenesis [BR:pkt03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     AT984_02380
Ribosome biogenesis [BR:pkt03009]
 Prokaryotic type
  rRNA processing factors
   AT984_02380
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1 DnaJ_CXXCXGXG
Other DBs
NCBI-ProteinID: ALT76225
UniProt: A0A0U3EXZ1
Position
complement(522027..525128)
AA seq 1033 aa
MKRMLINATQPEERRLAIVDGQKLLDFETEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEIARQYFREGVDVRTARVQDAIKEGQELLVQVEKEERGNKGAALTTFVS
LAGRYLVLMPNNPRGGGVSRRIEGEDREELKENLDQLEYPKGMSLIARTAGIGRSAAELQ
WDLNYMLKLWTAIDDAAKGGKGAYLIYQESSLVIRAIRDYFTADVGEILIDTDDLFEQAH
QFMNHVMPDQGHRVKRYRDDAPLFSRFQIEHQIETAFSRTVNLPSGGAIVIDHTEALVSV
DVNSARATRGGDIEETATRTNLEAADEIARQMRLRDLGGLIVVDFIDMEESKNRREVEQR
LRDALRQDRARVQFASISKFGLLELSRQRLRPSLSEGNHITCPRCNGTGHIRDTESSALQ
ILRMVQEESMKDNTAAVHVQVPVEVTSFLLNEKRTEITKIELKQRVTVLLVPNKHLETPN
YKLERLRHDDPRLENLQASYTMIEEQQDEVGITRRSDSDKGRSKQEPVIKGILPELPAPM
PSPAAPKAAPAAAAAAATPVAAPAAGGGFFGWIKNLFGAPAPAPVETPATPAKPANGERS
KREGGRDGAREGRGGREGREGREGRGRNGERTERGGDRNAKREGGRGDANKPQEARGERP
EGQQRPERPERAERGERGDRGDRNGRRGERNERGNEAKPEGLNANNEQQQQQRPERGNNE
RGEAGGRRPRGERPPRAERSEEQIAAANLASQSGQEPNAFVDSQAPAFGNDGIANADSEA
SNEERQGRGRRRRRNGGAREDGRPVEAGDAGADTQPAAVEGEANAAEGGNEAGDESQQQQ
AANGENRGRGRNRGRERGPRADRGDRAERGERNGNGEAGEQVATATEAAEQAPAALSTQV
EPVQAAPAAANAAVAEPVAAAAEVAVAAAAVAATAPVAAPAAPAAAPVAAATPQVPAFKL
AIDELQAVAAASGLQWVNSDADKIRAVQEAIAAEPKPVHVPREPKPVVSIEEGPLVLVET
RKDLGQVKLPFEV
NT seq 3102 nt   +upstreamnt  +downstreamnt
atgaaacgcatgctgatcaatgcgacgcagccggaagagcggcgcctcgcaatcgttgat
ggccaaaagctgctggacttcgagaccgaaatcgaaggccgcgaacagcgcaaaggcaat
atctacaaagccgtcgtgacccgcgtcgagccttcgctcgaagcctgtttcgtcgactac
ggcgaagaccgccacggtttcctgcccttcaaggaaatcgcccgccaatacttccgcgaa
ggcgtggacgtgcgcaccgcccgcgtgcaagacgcgatcaaggaaggccaggaactgctg
gtccaggtcgaaaaagaagagcgtggcaacaagggcgctgccctgaccaccttcgtctcg
ctggccggccgctatctggtgctgatgccgaacaacccccgcggtggtggcgtttcgcgc
cgcatcgagggcgaagaccgtgaagagctgaaggaaaacctcgaccagctcgaatacccc
aagggcatgagcttgatcgctcgcaccgcaggcatcggccgctccgccgccgaactgcag
tgggacctgaactacatgctcaagctctggaccgccatcgacgatgcggccaagggcggc
aagggtgcctacctgatctaccaggaatccagcctggtgatccgcgcgatccgtgactac
ttcaccgccgatgtcggtgaaatcctgatcgacaccgacgacctgttcgaacaggcccac
cagttcatgaaccacgtgatgcccgatcaaggccatcgcgtgaagcgctatcgcgacgac
gcgccgctgttcagccgtttccagatcgaacaccagatcgaaaccgccttcagccgcacg
gtcaacctgccctcgggcggcgccatcgtgatcgaccacaccgaagccctggtttcggtg
gacgtcaactcggcccgcgccacccgtggcggcgacatcgaggaaaccgccacccgcacc
aatctggaagccgccgacgagatcgcgcgccagatgcgtctgcgcgacctgggcggcctg
atcgtggtcgacttcatcgacatggaagagtcgaagaaccgccgcgaagtcgagcaacgc
ctgcgcgacgcgctgcgccaagaccgcgcccgcgtgcagttcgcgtccatcagcaagttc
ggcctgctggagctgagccgtcagcgcctgcgcccttccttgagcgaaggcaatcacatc
acctgcccgcgttgcaacggcaccggccacatccgcgacaccgagtcctcggcgctgcag
atcctgcgcatggttcaggaagagtccatgaaggacaacaccgccgccgttcacgtgcaa
gtgccggtggaagtgacctccttcttgctgaacgaaaagcgcaccgagatcaccaagatc
gagctgaagcagcgcgtcaccgtgctgctggtgcccaataagcatctggaaacgcccaac
tacaagctggagcgcctgcgccacgacgacccccgtctggagaacctgcaagccagctac
accatgatagaagagcagcaagacgaggtgggcatcacccgtcgcagcgattcggacaag
ggccgcagcaagcaagagccggtgatcaagggcatcctgcccgagttgcccgcccccatg
ccctcgccggcagcccccaaggccgcacctgctgccgcagcagcagccgctacgccggtg
gcagcacccgccgctggcggtggcttctttggctggatcaagaacctgttcggtgccccc
gcaccagccccggtggaaacaccggccacgcccgccaagcccgccaatggcgagcgcagc
aagcgcgaaggtggccgtgatggcgcccgtgaaggccgtggtggacgcgaaggtcgtgag
ggtcgcgaaggccgtggccgtaacggcgagcgcactgagcgtggcggcgaccgcaacgcc
aagcgtgaaggcggacgtggcgacgccaacaagccgcaagaagcacgcggtgagcgtccg
gaaggccagcagcgccccgagcgccccgagcgcgctgaacgtggcgagcgcggtgaccgt
ggtgaccgcaatggccgccgtggcgagcgcaacgagcgcggcaatgaagccaagcccgaa
ggcctgaacgccaataacgagcagcagcaacagcagcgccccgagcgcggcaacaacgag
cgtggcgaggccggtggccgccgcccgcgcggtgagcgtccgccgcgtgccgagcgcagc
gaagagcaaatcgccgccgccaacctggccagccagtcgggtcaagagccgaacgccttc
gttgacagccaggcgcctgccttcggcaacgatggcattgccaacgctgacagcgaagcc
agcaacgaagagcgtcaaggccgtggccgccgccgtcgtcgcaacggcggtgcccgtgaa
gatggccgccctgtcgaggcgggtgatgctggtgccgacacgcagcccgcagctgtcgaa
ggcgaggctaacgccgccgaaggcggtaacgaagccggcgacgagtcgcaacagcagcaa
gccgctaacggcgaaaaccgtggtcgtggccgcaaccgtggccgtgaacgtggtccccgc
gctgatcgtggtgaccgcgccgagcgtggtgagcgcaacggcaacggcgaagccggcgag
caagtcgccacggcaaccgaagctgctgagcaagcgcctgccgcactgagcacccaggtc
gagccggtgcaagccgcccccgcagccgctaacgcagcagttgctgagccggtggcagct
gccgctgaagtggcagtggctgcggctgcggttgcagcgaccgccccagtagcagcacct
gcagcacctgcagcagcgcctgtcgcagccgcaaccccgcaagtcccggccttcaagctg
gcgattgacgagctgcaagcggttgccgcggccagcggtctgcaatgggtcaactcggat
gccgacaagatccgcgccgtgcaagaagccatcgccgccgaacccaagccggtgcacgtg
ccccgcgagcccaagcctgtggtgagcatcgaagaaggcccgctggtcttggtcgagacc
cgcaaggatctgggccaggtcaagctgcccttcgaggtttga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (77)   
   KEGG ORTHOLOGY (1)   
   RefGene (74)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (89)   

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