KEGG   Parvibaculum lavamentivorans: Plav_0147
Entry
Plav_0147         CDS       T00580                                 
Name
(GenBank) integration host factor, beta subunit
  KO
K05788  integration host factor subunit beta
Organism
pla  Parvibaculum lavamentivorans
Brite
KEGG Orthology (KO) [BR:pla00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pla03032]
    Plav_0147
   03036 Chromosome and associated proteins [BR:pla03036]
    Plav_0147
   03400 DNA repair and recombination proteins [BR:pla03400]
    Plav_0147
DNA replication proteins [BR:pla03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    Plav_0147
Chromosome and associated proteins [BR:pla03036]
 Prokaryotic type
  Nucleoid associated proteins
   IHF (integration host factor)
    Plav_0147
DNA repair and recombination proteins [BR:pla03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Facilitator
      Plav_0147
SSDB
Motif
Pfam: Bac_DNA_binding HU-HIG HU-CCDC81_euk_1 HU-CCDC81_bac_1 HU-CCDC81_euk_2 HU-CCDC81_bac_2 HU-DNA_bdg
Other DBs
NCBI-ProteinID: ABS61770
UniProt: A7HPD7
Position
complement(162448..162780)
AA seq 110 aa
MIKSELVARLAQANPHLYQRDVERIVSTIFDEISAALARGDRVELRGFGAFSVKSRPART
GRNPRTGEPVHVDEKSVPFFKTGKELRERLNNADIADDKLMVDDSDDGDD
NT seq 333 nt   +upstreamnt  +downstreamnt
atgattaaatccgaactcgtcgcccgcctcgcacaggccaatcctcacctctatcagcgc
gacgtcgaacgcattgtcagcaccatattcgatgaaatcagtgctgcgctcgcacgcggc
gaccgggtggaacttcgcggttttggcgccttttcggtaaaaagccgccccgcgcggacg
ggccgcaacccgcgaaccggtgagccggtccatgtcgatgagaagtcggtgccgttcttc
aaaacgggcaaggaactgcgtgagcgcctcaataatgccgacatcgctgacgacaagctt
atggtcgatgatagcgacgacggcgacgactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (41)   
   KEGG ORTHOLOGY (1)   
   RefGene (38)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (7)   
   Pfam (7)   
All databases (55)   

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