KEGG   Parvibaculum lavamentivorans: Plav_0196
Entry
Plav_0196         CDS       T00580                                 
Name
(GenBank) 3'-5' exonuclease
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
pla  Parvibaculum lavamentivorans
Brite
KEGG Orthology (KO) [BR:pla00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:pla03016]
    Plav_0196
Enzymes [BR:pla01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     Plav_0196
Transfer RNA biogenesis [BR:pla03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    Plav_0196
SSDB
Motif
Pfam: DNA_pol_A_exo1 RNase_H_2
Other DBs
NCBI-ProteinID: ABS61819
UniProt: A7HPI6
Position
complement(220820..221431)
AA seq 203 aa
MAVTLHRGDLPEGLSFGESVAVDTETMGLHPERDQLCVVQLSAGDGNAHIVQLDRGTYNA
PRLRALMADPAILKIFHFARFDVAMLQRYLGVVTAPVYCTKIASKLVRTYTDRHGLKDLA
RELVNIDMSKQQQSSDWGAASLTDAQLSYAASDVLHLHEIKSVLDGMLAREGRTELARAC
FAFLPVRAALDLAGWPEEDIFAH
NT seq 612 nt   +upstreamnt  +downstreamnt
atggcggtcacgctgcacaggggcgatctccccgaggggctttccttcggcgaaagcgtc
gctgtcgataccgagacgatgggcctccatcccgagcgggaccagctctgcgtggtccag
ctctcggcgggcgacggcaacgcccatatcgtccagctcgaccgcggcacctataacgcg
ccgcgcctcagggcgctgatggccgatcccgccatcctcaagatcttccacttcgcgcgt
ttcgacgtcgccatgctgcagcgttatctcggtgtggtcacggcgccggtctattgcacc
aagatcgcctcgaagcttgtccgcacctataccgaccgtcacggtctgaaggatctcgcg
cgagaactggtcaatatcgacatgtcgaagcagcagcaaagctcggactggggtgccgcc
agcctcaccgacgcgcagctcagctatgcggcgtccgacgttctccaccttcacgagatc
aagtcggtgcttgacggcatgctcgcccgcgagggccgcaccgaactcgccagggcctgt
ttcgcctttcttccggttcgcgccgcgctcgaccttgcgggctggccggaagaagatatc
ttcgctcattga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (68)   
   KEGG ORTHOLOGY (1)   
   RefGene (65)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (76)   

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