KEGG   Planctomyces sp. SH-PL62: VT85_02045
Entry
VT85_02045        CDS       T04401                                 
Symbol
ykoU
Name
(GenBank) putative ATP-dependent DNA ligase YkoU
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
plh  Planctomyces sp. SH-PL62
Brite
KEGG Orthology (KO) [BR:plh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    VT85_02045 (ykoU)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:plh03400]
    VT85_02045 (ykoU)
Enzymes [BR:plh01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     VT85_02045 (ykoU)
DNA repair and recombination proteins [BR:plh03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     VT85_02045 (ykoU)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_primase_S
Other DBs
NCBI-ProteinID: AMV36195
UniProt: A0A142YAI4
Position
complement(536597..538051)
AA seq 484 aa
MPLEEYNARRDFTRTREPAGTRGEEHRRPIFVVQEHHASVHHFDFRLEADGVLKSWSVPK
GPSLDPSAKRLAVQVEDHPLSYATFEGTIPKGQYGGGTVAIWDQGTYESLMEDQPEPKSV
SEAIEDGRLEFVMHGERLRGKFNLVRMKWGERKPQWLLMKSNDEFAERGTEPESGPRPKR
KSKPKRAESARPEPSTEAPEAVNLTHPGRIVYPDAGLTKKDVFAYYQKVAGRLLPFLKDR
PITLERLPDGLAGSAHFWQKNTPASYPGWIPRVELQTERGKPVRYALVNDEPTLLYLVNQ
GTLTFHVWASRVGDLDRPDFVLFDLDPGEASFADVVSVARAVKGELDELGVESFVKTSGK
TGLHVLTPWTRKTDFDEARAWALELAEKVAGGMPERATVEIRKAKRGGRVYIDVLQNARG
HHAVPPYVLRATPGATISTPLDWKEVASKLDPAAFTAKKVLARLRKVDPFAGLVESFGEQ
AAER
NT seq 1455 nt   +upstreamnt  +downstreamnt
atgccgctggaagaatacaacgccaggcgagacttcaccaggacccgagagccggccggg
acaaggggcgaggagcaccggcggccgatcttcgtcgtccaggagcaccacgcctcggtc
caccacttcgacttccgcctggaggccgacggcgtgctgaagagctggtcggtgcccaag
gggccgtcgctcgacccctcggcgaagcggctggccgtccaggtggaggatcaccccctc
agctacgccacgttcgaggggacgattcccaagggacagtacggcggcggcacggtcgcc
atctgggaccagggcacctatgagagcctgatggaagaccagcccgagccgaagtccgtc
tccgaagcgatcgaggacggccggctcgagttcgtcatgcacggcgaacggctcaggggg
aaattcaacctggtccgcatgaaatggggcgaacgcaagccccaatggctgctgatgaag
tcgaacgacgagttcgccgagcgggggaccgaacccgagtccgggccgcgaccgaaacgg
aagtcgaagccgaagcgggccgagtccgcccggcccgagccgtcgaccgaagcgccggag
gcggtcaatctgacgcaccccggccggatcgtctatcccgacgccgggctcacgaagaag
gacgtcttcgcttactatcagaaggtcgcggggcgcctcctgccgtttttgaaggaccgg
cccatcaccctcgaacggctgccggacggcctcgccggatccgcccatttctggcagaag
aacacgcccgcttcctaccccggctggattccgcgcgtcgagctccagactgagcgcggc
aagccggtccgctacgcgctggtcaacgacgagccgacgctcctctatctcgtgaaccag
gggacgctgaccttccacgtctgggcctcgcgcgtcggcgacctcgaccggccggacttc
gtgctcttcgatctcgatccgggcgaggcttctttcgccgacgtcgtctcggtggccagg
gcggtcaagggggagctggacgaactgggcgtcgagtcgttcgtgaagacctcgggcaag
accggtctccacgtcctgaccccctggacccgcaagacggacttcgacgaggcgagggcc
tgggcgctcgagctggccgagaaggtggccggcgggatgcccgagcgggcgaccgtcgag
atccgcaaggcgaagcgcgggggacgggtctacatcgacgtcctgcagaacgcgcgaggc
catcacgccgtccccccctacgtcctgcgggcgacgccgggcgcgacgatctccacgccg
ctcgactggaaggaggtcgcgagcaagctcgacccggccgcgttcacggcgaagaaggtc
ctcgccaggctgcgcaaggtcgaccccttcgcggggctcgtcgagagcttcggcgagcag
gcggcggagcgttga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (18)   

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