KEGG   Planctomyces sp. SH-PL62: VT85_22765
Entry
VT85_22765        CDS       T04401                                 
Symbol
alkA_2
Name
(GenBank) DNA-3-methyladenine glycosylase 2
  KO
K13529  AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
Organism
plh  Planctomyces sp. SH-PL62
Pathway
plh03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:plh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    VT85_22765 (alkA_2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:plh03000]
    VT85_22765 (alkA_2)
   03400 DNA repair and recombination proteins [BR:plh03400]
    VT85_22765 (alkA_2)
Enzymes [BR:plh01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.21  DNA-3-methyladenine glycosylase II
     VT85_22765 (alkA_2)
Transcription factors [BR:plh03000]
 Prokaryotic type
  Helix-turn-helix
   AraC family
    VT85_22765 (alkA_2)
DNA repair and recombination proteins [BR:plh03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     VT85_22765 (alkA_2)
SSDB
Motif
Pfam: AlkA_N Ada_Zn_binding HTH_18 HhH-GPD HTH_AraC
Other DBs
NCBI-ProteinID: AMV40271
UniProt: A0A142YM52
Position
5728673..5730133
AA seq 486 aa
MELEPDLCHRVLTARDARFDGLFFVGVTSTRIYCRPICPARTPRRDRCRFFPGASAAEQA
GFRPCLRCRPELAPGSAPVDAVGRTARLAASRIGAGAMDEEGGVEALAGEMGVGSRHLRR
VLRQELGVSPVALAQTHRLLLAKQLLTDTAMPIIDVAFASGFSSVRRFNALFLARYRLTP
RDIRRSRGREIAGGEIRLTLAYRPPLAWDSMLRFLGDRAVAGVEAVVGGSYLRTVAIGEA
RGWLKVEPDAARHALRVELPMSLAPALPRVLGRLRDLFDLDARPDVIDDHLGRDARLRGT
VAGLRVPGAFDGFELAARAVLGQQVSVRAATTLAGRFASAFGEPIETPFPQLDRLAPSPA
RVAEAAPGELAALGLVAARAECLGALAKAARDRLVSLEPGPDPVACMERLTEIPGVGPWT
AAYIGMRGLRWPDAFPHADLVLRKALGGRTAREVLEAAEPWRPWRAYAAMRLWNGSGKLE
GREEAR
NT seq 1461 nt   +upstreamnt  +downstreamnt
atggagcttgagcccgacctctgccaccgcgtcctgaccgcccgcgacgcccgtttcgac
gggctgttcttcgtgggggtgacgtccacgcggatctactgtcgcccgatctgcccggcg
cggacgcccaggcgggaccgctgccggttcttccccggcgcctccgccgcggagcaggcg
gggtttcgcccttgcctgcgatgccgcccggagctggcgccgggctccgcgccggtggat
gctgtcggccggacggcgcggcttgcggcgagccggatcggcgcgggggcgatggacgaa
gaggggggcgtagaggccctcgccggcgagatgggcgtcggctcacggcacctcaggcgg
gtgctccgccaggaactcggggtctcgccggtcgcgctcgcccagacgcatcgcctgctg
ctcgcgaagcagcttttgaccgatacggcgatgccgatcatcgacgtcgcgttcgccagc
gggttctccagcgtccggcggttcaacgccctgttcctcgcccggtatcggctcaccccg
cgcgacatccgcaggtcgcgaggacgggagatcgccggcggcgagatccggctgacgctc
gcgtaccgtcctccgctcgcctgggattcgatgctccggttcctcggcgatcgggccgtc
gcgggcgtcgaggccgtggtcggcgggtcgtacctgcgcaccgtcgcgatcggcgaggcg
cggggttggctgaaggtcgagcccgacgcggcccgccacgcgctccgggtggagctgccg
atgagcctggcgcccgccctgccccgcgtcctcggccgcctccgcgacctgttcgatctc
gacgcccgccccgacgtgatcgacgaccacctgggccgcgacgctcggctccgcggcacg
gtcgccgggctccgcgtcccgggggcgttcgacggcttcgagctggccgcccgcgcggtg
ctgggccagcaggtttcggtgcgcgcggcgacgacgctcgcggggcggttcgcctcggcc
ttcggcgagccgatcgagaccccgttcccgcaactcgaccgtctcgccccctcgccggcg
cgcgtcgccgaggccgcccccggcgagctggccgccctggggctggtcgcggcccgggcg
gaatgcctgggtgcgttggcgaaggccgcgcgcgacaggctcgtctcgctcgagccgggg
ccggaccccgtcgcctgcatggaacggctgacggagatccctggcgtcggcccgtggacc
gccgcctacatcggcatgcgcggcctgcgctggccggacgccttcccccacgcggacctc
gtgctgcgcaaggccctgggggggcggaccgctcgcgaggtgctggaagcggccgagccg
tggcggccctggcgggcgtacgcggcgatgcgtctttggaacgggtcgggaaaactcgaa
ggacgggaggaggcgcgatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (28)   

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