KEGG   Candidatus Planktophila limnetica: PHILAsVB114_00345
Entry
PHILAsVB114_00345 CDS       T05067                                 
Name
(GenBank) DNA polymerase III subunit gamma/tau
  KO
K02343  DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
Organism
plim  Candidatus Planktophila limnetica
Pathway
plim03030  DNA replication
plim03430  Mismatch repair
plim03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:plim00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PHILAsVB114_00345
   03430 Mismatch repair
    PHILAsVB114_00345
   03440 Homologous recombination
    PHILAsVB114_00345
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:plim03032]
    PHILAsVB114_00345
   03400 DNA repair and recombination proteins [BR:plim03400]
    PHILAsVB114_00345
Enzymes [BR:plim01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     PHILAsVB114_00345
DNA replication proteins [BR:plim03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     PHILAsVB114_00345
DNA repair and recombination proteins [BR:plim03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     PHILAsVB114_00345
SSDB
Motif
Pfam: DNA_pol3_delta2 DNA_pol3_gamma3 AAA RuvB_N AAA_22 AAA_16 AAA_14 Rad17 AAA_5 AAA_30 Mg_chelatase zf-CXXC nSTAND3
Other DBs
NCBI-ProteinID: ASY27148
UniProt: A0A249LDF6
Position
65401..67089
AA seq 562 aa
MSLALYRKYRPSVFADVIGQEHVTVPLSNALSSDKTHHAYLFSGPRGCGKTSSARIMARS
LNCEKGPTPTPCGQCQSCKDLVANGPGSIDVIELDAATHGLVDDARDLRDKAFFAPVNSK
YKIYIIDEAHQLGPGAANALLKVVEEPPPHVIFIFATTEPEKLISTIRSRTHHYPFRLVP
PGVLTAHLEKICAAEGVEVAKGVLPLVVRASGGSVRDALSVLGQLLAGAGKDGVSYDIAV
QLLGFTDGALLDDAIDALAAHDAATLFATIDRVIESGHDPKRFTADLLERLRDLMIVDAL
GETSANSILRDMPDDQLERMRNQAQRIGTASLSRAADIAADGLTEMRGATAPRLILELIC
GRILLPISDATETGLLARIERLERVENIAPMPTLSKSAPSVEAVKPSKVLPREETKEALP
VASEQPIAKKATVSTMDIAGLRRIWPDVIENVKKRRRLTWSLLSASAQILGVDDTNITIG
IVNAGARDSFVRSESDEILRQAFIEVVGLDRKIECVVDPSVNPSTPATRAVRVDESPSDV
EQLSGAALLARELGAQVITDKK
NT seq 1689 nt   +upstreamnt  +downstreamnt
atgtcactagcgttgtatcgcaagtatcgcccttctgtatttgcagatgttattggtcaa
gaacatgtgactgttcctttaagtaatgcattgtcatcagataaaacacatcatgcttat
ttattcagcggtccacgtggttgcggtaaaacatctagcgcacgcatcatggctcgttca
ctcaattgcgaaaaggggccaacaccaactccatgcgggcagtgccaatcatgcaaagac
ttagttgcaaatggtccaggatcaattgatgttattgaattagatgcagcgactcatggt
ttagtcgatgatgcaagagatttaagagataaagctttctttgcacccgttaatagcaag
tacaagatttatattattgacgaagcacaccaacttgggccgggtgctgcaaatgcgttg
ctcaaagtggttgaagagccacctcctcacgttatttttatctttgccacaacagagcca
gaaaaactgatttcaactatccgctcacgtacacaccattacccattccgtttagtacca
cctggagtactgactgcgcatttagaaaagatctgtgctgcagaaggtgttgaagtagct
aaaggtgtgctgccattggtggtgcgcgctagtggtggttctgtgcgtgatgcgttatct
gtgttgggtcaattgcttgcaggcgctggcaaagacggcgtcagttatgacatcgcagtg
cagctacttggattcactgacggtgcgttgttggatgatgcaatcgatgcgctggcagca
cacgatgcagcaacattgtttgcaacaatcgatcgcgtgatcgaaagcggtcatgatcca
aagagattcaccgcagacttgctagaacgtctacgcgatttaatgatcgtggatgcactc
ggtgaaacaagtgcgaattcaatcttgcgcgatatgccagatgaccaactagaacgcatg
cgcaatcaagcacagcgcatcggtactgcttcactttcgcgcgcagcagacatcgcagca
gatggattaacagaaatgcgcggtgctaccgcaccacgattgattctcgaactcatttgc
ggccgcatcttgttaccaataagtgatgcaacagagaccggattacttgctcgaatcgaa
cgtttagaacgcgttgaaaacatcgcgccaatgcctactctttccaagagtgctccttcg
gtggaagctgttaaaccttcaaaggttttacctagagaagagactaaagaagcacttccc
gtggcttcggaacaaccgattgcgaagaaggcaacagttagcacaatggacattgctggt
cttcgacgcatatggcctgacgtaatagaaaatgttaagaagcgtcgtagattgacgtgg
tcactgttgtccgcgagcgcacaaatccttggtgttgatgacacaaacataacgatcgga
atcgtcaacgccggtgcacgtgattcatttgtgcgatcagaaagtgatgagattctgcgc
caagcatttattgaagttgtgggacttgatcgcaagattgaatgtgttgtggatccatca
gtgaatccaagtacacctgcaacgcgtgcggtacgcgtcgatgaatcaccgagtgatgtt
gaacagctcagcggtgcagcgttgttagcacgcgaactaggcgcacaagttattacggat
aagaagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (13)   
   Pfam (13)   
All databases (26)   

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