KEGG   Candidatus Planktophila limnetica: PHILAsVB114_01175
Entry
PHILAsVB114_01175 CDS       T05067                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
plim  Candidatus Planktophila limnetica
Pathway
plim03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:plim00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    PHILAsVB114_01175
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:plim03021]
    PHILAsVB114_01175
   03400 DNA repair and recombination proteins [BR:plim03400]
    PHILAsVB114_01175
Enzymes [BR:plim01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     PHILAsVB114_01175
Transcription machinery [BR:plim03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     PHILAsVB114_01175
DNA repair and recombination proteins [BR:plim03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      PHILAsVB114_01175
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: ASY27291
UniProt: A0A249LDV2
Position
216639..220451
AA seq 1270 aa
MLDVNFFDELRIGLASADHIREWSFGEVKKPETINYRTLKPEKDGLFDEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITEVDKEAREEDMPQLEKKLANDRKKIETRRDNDLDVRTKKLEAD
IAELESEDAKSDVKRKVRESAERELKGLRDRSERELNRLEDVWTRFKNLKVQDLEGDENL
YREMRDRYGMYFKGDMGAAAIKKRLETFDLETEYKILTDLSENGKGAKKTRAIKRLKVVN
AFMTTSNHPASMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLADL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PVVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPANGRPITTPTQDMVLGLYWLTMEREAELGEGR
AFSSVAEAIMAHDQHTVSLQAKVKIRLSTTGQTLSTTVGRALFNEALPADFRFVDVDVTK
KQLGQIVDELAEFYPKVVVAETLDALKSLGFHWASRAGATIGIEDVVTPPRKLEILETYE
TQADKVQSQYEKGLITDDERRQELIEIWTKATAEVGKEMEENFPRVNPVWMMVTSGARGN
MMQIRQIAGMRGLVANPKGEIIPRPIKSNFREGLSVLEYFISTHGARKGLADTALRTADS
GYLTRRLCDVAQDVIIREEDCGTDRGLVLPIASRQQSGGLVKHDHVETSVYGRTLADDIE
VDGKVIATAGTDLGDRVIAALVEAGVDEVKIRSVLTCDSKVGQCAACYGRSLASGQLVAV
GEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITHGLPRIVELFEARTPKGVAPIAETA
GVVSFREDAKGKKIIVTPDDGGEEVAYPITRRQKLLVEEGSRVDVGQKMVVGAIDPKQVL
RILGPRATQVHLVNEIQSVYRSQGVGIHDKHIEVIVRQMLKRITVLEAGDADLLPGELVE
RGRFETENRRVVTTGGKAASGRPELMGITKASLATESWLSAASFQETTRVLTDAALSEKS
DPLLGLKENVIIGKLIPAGTGLARYRNIRVEPTEEAKAAVYAAYDEYDFTPFESAGSGEA
VRLDEVEVPR
NT seq 3813 nt   +upstreamnt  +downstreamnt
atgttagatgttaacttctttgatgaattgcgaattggtttagcttcggctgaccacatc
cgtgagtggtcatttggcgaagtaaagaagccagagacaattaactaccgcacactaaag
cctgaaaaggatggactctttgacgagaagatcttcggaccaactcgtgactgggaatgt
tattgcggtaagtacaagcgcgtgcgcttcaagggaattatctgcgaacgttgcggtgtt
gaagttactcgcgcaaaggtacgtcgcgaacgtatgggacacatcgaacttgctgctcca
gtaacacatatctggtacttcaagggtgttccatcacgtcttggatatttactagacctt
gcacctaaggatctagaaaaagtaatttactttgctgcctacatgatcacagaagttgat
aaagaggctcgcgaagaagatatgccacaacttgaaaagaagttggcaaatgatcgcaag
aagattgaaacacgtcgcgataacgatctagacgttcgcaccaaaaagctcgaggcagat
attgctgaactcgagtcagaagatgcgaagtcagatgtaaagcgaaaagtacgcgagagt
gctgagcgcgaactcaagggacttcgtgatcgttcagagcgcgaactcaatcgtttagaa
gatgtgtggactcgctttaaaaaccttaaggttcaagatctcgaaggtgatgaaaacctt
taccgcgaaatgcgtgatcgttatggaatgtatttcaagggagatatgggcgcggctgca
attaagaagcgccttgaaactttcgatcttgaaactgagtacaagattcttaccgatctt
tctgagaacggaaaaggcgcaaagaagactcgcgctatcaagcgtctaaaggtcgttaat
gcattcatgacaacaagtaaccacccagcatcaatggttcttgattgcgttccagttatt
ccgcctgatctacgtccgatggttcaactagatggtggtcgttttgcgacttcagatctc
aacgatctttaccgtcgtgttattaaccgcaacaaccgtttgaagcgtcttgctgatctc
ggtgcaccagaaattatcgttaacaatgaaaagcgcatgcttcaagaagcagttgacgca
ctctttgataacggtcgtcgtggacgtccagtaacaggtccaggaaaccgtgcacttaaa
tcactttcagacatgctcaagggtaagcaaggacgtttccgtcagaacttgctcggtaag
cgcgttgattattcaggtcgttctgtaattgttgttggcccacagttgaagttacatcag
tgtggtcttccaaagcagatggcactggaactctttaagccattcgtaatgaagcgtctt
gttgaccttaaccacgcgcagaacattaaatctgcaaagcgcatggttgaacgtgctcgt
ccagttgtgtgggatgttctagaagaagttattgcagaacaccctgtactacttaaccgt
gcaccaaccctgcaccgtctaggtattcaagcttttgaaccacaattggttgaaggtaaa
gcaattcagattcacccactcgtatgtacagcatttaacgctgacttcgacggtgaccag
atggctgttcacttgccgctatctgctgaagcgcaggccgaagcacgtatcttgatgttg
tcttcaaacaacattttatctcctgctaatggtcgtccaattactacaccaacacaggac
atggttcttggtctttattggctcacaatggagcgcgaagcagaactcggcgaaggccgc
gcattctcttcagttgctgaagcaatcatggctcatgatcagcacacagtttcattgcaa
gcaaaggtaaagattcgcctatctacaacgggtcaaactctttctacaactgttggtcgc
gcattgtttaatgaagcgcttcctgcagattttcgtttcgtagatgttgacgtaacaaag
aagcaactaggacaaatcgttgacgaactcgctgagttctatccaaaggttgtcgttgct
gaaactctcgatgcactgaagtcacttggtttccactgggcatcacgcgccggtgcaact
attggtatcgaagatgttgttacacctcctcgtaaacttgaaattcttgaaacctatgaa
acacaggctgacaaggttcaatcacaatacgaaaagggactcatcacagatgacgagcgc
cgtcaagaactcattgagatctggacaaaggcaacagctgaagttggtaaagagatggaa
gaaaacttccctcgcgtcaatccagtgtggatgatggttacttcaggtgctcgtggaaat
atgatgcagattcgtcagatcgcaggtatgcgcggacttgtcgctaacccaaagggtgaa
attattcctcgcccaattaagtcaaacttccgcgaaggtctttctgtacttgagtacttc
atttctactcacggtgcacgtaagggtcttgcagatacagcgcttcgtaccgctgactct
ggttacctcacacgtcgtctctgcgacgttgcacaagatgtaattattcgtgaagaagat
tgcggtactgatcgcggtctagttcttccaattgcatctcgtcaacaatcaggtggactt
gtaaagcatgatcacgttgaaacatctgtatacggtcgaacccttgctgatgacatcgaa
gttgatggcaaagtaattgcaactgctggtacagatcttggtgatcgcgttatcgcagca
cttgttgaagcaggcgtggacgaagtaaagattcgctcagttcttacttgcgatagcaag
gtcggacagtgcgcagcttgctacggtcgctcacttgcatcaggtcaactcgttgcagtt
ggtgaagcagtcggaatcattgcagcacaatcaatcggtgaaccaggtacacagctaaca
atgcgtaccttccacactggtggtgttgcaggagatgacatcactcacggtcttccacgt
atcgttgaactcttcgaagcacgcacacctaagggtgttgcaccaattgcagaaaccgcg
ggtgttgtttcattccgtgaagatgcaaagggcaagaagatcatcgttacaccagatgat
ggtggcgaagaagttgcttacccaattacacgtcgtcagaagttacttgttgaagaaggt
tcacgcgttgatgtcggccagaagatggttgtcggtgcgattgatccaaagcaggtactt
cgtattcttggaccacgtgcaactcaagttcacttggtaaatgaaattcaatctgtatac
cgctcacaaggtgtaggtattcacgataagcacatcgaagtaattgttcgtcaaatgctc
aagcgcattacagtgcttgaagcaggcgatgctgatctacttccaggtgaactcgttgaa
cgcggtcgctttgagacagaaaaccgtcgcgttgtcacaactggtggcaaggcagcatct
ggtcgtccagaacttatgggaatcacgaaggcgtcccttgcaactgagtcatggttatca
gctgcttccttccaagaaaccactcgagttctaaccgatgcggccctgtctgagaagagc
gatccacttcttggcctcaaggagaacgtcatcatcggtaagttgatcccagctggaacc
ggtcttgctcgttaccgcaatatccgagttgagccaacggaagaagcaaaggcagcggtt
tatgcggcctatgacgagtatgacttcacaccatttgagtcagccggctcaggtgaagca
gttcgcctcgatgaagtagaggttcctcgctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

Download RDF
DBGET integrated database retrieval system