KEGG   Planctopirus limnophila: Plim_0935
Entry
Plim_0935         CDS       T01225                                 
Name
(GenBank) ABC transporter related protein
  KO
K11085  ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
Organism
plm  Planctopirus limnophila
Pathway
plm02010  ABC transporters
Brite
KEGG Orthology (KO) [BR:plm00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   02010 ABC transporters
    Plim_0935
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:plm02000]
    Plim_0935
Enzymes [BR:plm01000]
 7. Translocases
  7.5  Catalysing the translocation of carbohydrates and their derivatives
   7.5.2  Linked to the hydrolysis of a nucleoside triphosphate
    7.5.2.6  ABC-type lipid A-core oligosaccharide transporter
     Plim_0935
Transporters [BR:plm02000]
 ABC transporters, eukaryotic type
  ABCB (MDR/TAP) subfamily
   ABCB-BAC subgroup
    Plim_0935
SSDB
Motif
Pfam: ABC_membrane ABC_tran SMC_N AAA_21 AAA_16 AAA_29 AAA_22 SbcC_Walker_B Zeta_toxin AAA_15 AAA_28 AAA_23 RsgA_GTPase MMR_HSR1 TerL_ATPase CobA_CobO_BtuR AAA_24 DUF724
Other DBs
NCBI-ProteinID: ADG66779
UniProt: D5SSN1
Position
complement(1198129..1200168)
AA seq 679 aa
MESLNQLAPYLWRVRGYLIGSSIAALLVAIFWSAGLMLSYPLVKVLLQGQSLQAYLTEET
QKAETETAQHQAEAARVQHQLDQLDPNVSSSEKISLLKSLDRAQRQLASSGWRLMFCTWL
SKQLSSWLPEQAFPTLVLLLALLAIVTLAKGLTVYLQENLVGIAVESTMVMLRQRMFQHV
LRLDHVTLSLLGTPQLMARFTYDLQQLGTGLTLFGGRLIVEPLKILSVLICCFLVNWRLT
TLSLIVVPLGALLFGRYGKKIKKASRKQMESMSRIFTQLEETLRSFRTILAFGLERQRRQ
SFHREQKVAFEKTMKILRMDALSSPTTEILATLGACMALLPGAYMVLRQKSEIFGIQLSE
GPLDIAELALLYTLMGGLLDPARKLSAVYPKFKKSSAACDRVFSLLKTHTRLQQDRQWVP
LPRHTDKIEFENITYTHPVAEDRNQARPPALDRVSLRIAFGETVAIVGGNGSGKSTLINL
LPRLYDPDFGILRIDGIDIRHTQLALLRKQIAVVPQETQLFNRTISENLRYGSWDAPADR
VTRLAHDFAVDSFASRFPDGLETSVGERGQRLSGGQRQRIALVRALLRDPAILILDEATS
AIDRESETQIYEALAHHKQNRTVLIVTHSLTDTLLKIVDRVVVMDHGQIIAHGEHTQLLK
TCPIYRNLFAAQREQAHAA
NT seq 2040 nt   +upstreamnt  +downstreamnt
atggagagcctgaaccaactagccccttatctctggcgtgtccggggatatctgattggc
tcatcaatcgcagccctgctggtggccattttctggtcagccgggctgatgctctcctat
cctctcgtcaaagttctcttacaaggccagagcctgcaggcttatctcacagaagaaacc
cagaaagccgaaaccgaaacagcccagcaccaggccgaagccgcccgagttcaacatcag
ctcgaccaactcgacccgaatgtctcatcctccgaaaaaatcagtctgctcaaaagcctc
gaccgtgcccagcggcaactggcctcttcgggctggcggctcatgttctgcacctggctg
tcaaaacaactttcctcgtggctcccagaacaggcatttcccacactcgtcctgctgctc
gcattattggcaatagtcacgctggccaaaggtttaacggtttacctgcaggaaaatctg
gtcggtatcgccgtcgaatcgaccatggtcatgctccgccagcgcatgttccagcacgtt
ctcaggctcgaccatgtcaccttaagtctcctgggtacaccccagttgatggcgcgcttc
acctatgacctgcagcagttagggacagggctcaccctgttcggcggacgtttaattgtc
gaacctttaaagattctcagcgtgctgatctgctgttttctcgtgaactggcgattaaca
acgctttcgctaatcgtcgtcccgctgggagcattactttttggccgctatggcaagaaa
atcaaaaaagccagccgcaaacagatggaaagcatgtcacggatcttcactcaactcgaa
gaaacactcagatcatttcgcacaattctcgcctttggtctcgaaaggcaaaggcggcaa
agctttcatcgcgaacagaaagtggccttcgaaaaaacgatgaaaatcctgcggatggat
gcgctctccagccccaccacagaaattctcgccacactgggagcctgcatggcgctgctt
ccgggagcttacatggtcctccgccagaagtccgaaattttcgggattcaactctccgaa
gggcctctcgatatcgccgaactggcgttactttacacgctcatgggtggcctcctcgac
ccggcccgcaaactctctgccgtctatcccaagttcaaaaaatcttccgccgcctgcgat
cgtgtcttcagcctgctgaaaactcacacccgtttacagcaggatcgacaatgggtgcca
ttacctcgccacaccgacaagattgagttcgagaacatcacctatactcaccccgtcgcc
gaagaccgcaatcaggcacgtccgccggctcttgaccgagtctccctgaggattgccttc
ggcgaaaccgtggccattgtcggcgggaacggctctggaaaatctacactcatcaacctg
ctccccaggctctacgacccggatttcggcatcctgcgcattgacggaattgatattcgc
cacactcagttggcactgttacgaaaacagattgccgtggtccctcaggaaacacagctc
ttcaaccgcaccatctccgaaaacctgcgctatggcagttgggatgctcccgctgaccgc
gtgactcgactggcacatgattttgccgtcgattcctttgccagtcgtttccccgatggt
ctcgaaacttccgtcggcgagcggggtcaacggctttccggtggtcaaagacaacgcatc
gccctcgtaagagcactcctgcgcgatcctgccattctcattctcgatgaagccacatca
gccattgatcgcgaaagcgaaacacagatttacgaagcactcgcccaccacaagcagaac
cgcaccgtgctgattgtcacacactctttgacagacacactgctcaaaatcgtcgatcga
gtggtggtgatggatcatggtcagatcatcgcacatggcgaacatacccaactgttgaag
acctgcccgatctatcgaaatttgtttgccgcccagcgcgaacaagcccacgccgcctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (18)   
   Pfam (18)   
All databases (41)   

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