KEGG T01225: Plim

Planctopirus limnophila: Plim_2227

Entry

Plim_2227         CDS       T01225

Name

(GenBank) tRNA pseudouridine synthase B

K03177

tRNA pseudouridine55 synthase [EC:5.4.99.25]

Organism

plm Planctopirus limnophila

Brite

KEGG Orthology (KO) [BR:plm00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:plm03016]
    Plim_2227
Enzymes [BR:plm01000]
5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.25  tRNA pseudouridine55 synthase
     Plim_2227
Transfer RNA biogenesis [BR:plm03016]
Eukaryotic type
  tRNA modification factors
   Psudouridine synthases
    Plim_2227
Prokaryotic type
    Plim_2227

SSDB

Motif

Pfam:

TruB_N TruB_C_2 RNA_pol_Rpb6

Other DBs

NCBI-ProteinID:

ADG68053

UniProt:

D5SMZ8

Position

2868659..2869600

AA seq 313 aa
MKWGFLNIHKPLRMTSRDVVSKIERAVRPLKVGHAGTLDPLAEGVLVIGIGPATRLTEHV
QALPKGYSATFHLGQTTETDDAEGQLSTQVDTQHLTRELIEQELTHFCGQIQQIPPRFSA
VHVAGKRAYDLARSGQDFELTPKTVEVHQLALTKYANPDIELQIECGSGTYIRSLARDLG
EKLQCGAYMSALTRTHIGPFHLDSALRLDSLPNGFSLADLQPLLLHPMLAFTESQRWVAT
RQAVVDLQHGKNISGDALQALHSTAESQPEIPAHVCILNEDREVIAVAEFCPQTKLLRPR
IGIPKHFLEAHSC

NT seq 942 nt +upstreamnt +downstreamnt
atgaagtggggctttctcaatatccataaaccactgcgaatgacctcacgcgatgtggtc
agcaaaatcgaacgtgctgttcgccccctgaaggtcgggcatgctggaactctcgatcca
ctcgcagaaggtgttctggtcattggaatcggcccggcaactcgtctgacggaacacgtt
caggcgttgcccaaaggatattctgccaccttccatctcgggcaaaccaccgaaacagac
gatgccgagggacaactctcgacccaggtcgatacgcaacatctcactcgcgaattgatc
gaacaggaactcactcatttttgtggccagattcagcagattccccctcgcttcagtgcc
gtccatgtggcggggaaaagagcttatgacctggcccgatctgggcaggattttgagctg
acgcctaaaacggttgaggttcatcaactcgcgttgacaaagtacgccaacccggacatc
gaattgcagatcgaatgtggcagtggcacttacattcgatccctggcaagagatctcggg
gagaaacttcagtgcggagcctatatgtccgcactgacacgcacacatattggaccattt
cacctcgatagcgcactgcggctcgacagcctgccgaatggcttcagcctggctgatctc
cagccgctgttgctccaccccatgctggcatttactgaatctcagcgctgggtggccacg
cgccaggccgtcgtagatctgcagcatggcaaaaacatctcaggtgatgctttgcaggcc
ctgcactcaacggcagagagtcaaccagagattcctgcccatgtctgcatcctgaatgaa
gaccgggaagtgattgcggtcgccgagttttgcccgcagacgaaacttcttcgtccgcgc
atcggcatccccaaacatttcctggaggcacactcctgctga

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (19)   

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