KEGG T05473: AA042

Pseudomonas lundensis: AA042_14045

Entry

AA042_14045       CDS       T05473

Name

(GenBank) polyribonucleotide nucleotidyltransferase

K00962

polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]

Organism

plq Pseudomonas lundensis

Pathway

plq03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:plq00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AA042_14045
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:plq03019]
    AA042_14045
   03016 Transfer RNA biogenesis [BR:plq03016]
    AA042_14045
Enzymes [BR:plq01000]
2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     AA042_14045
Messenger RNA biogenesis [BR:plq03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     AA042_14045
Transfer RNA biogenesis [BR:plq03016]
Prokaryotic type
  tRNA degradation factors
   AA042_14045

SSDB

Motif

Pfam:

RNase_PH PNPase RNase_PH_C S1 KH_1 KH_2 S1_2

Other DBs

NCBI-ProteinID:

AOZ13641

Position

3117176..3119281

AA seq 701 aa
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS
VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVLST
SKKTDPDVAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVV
AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVIQAVKELAAEAAKPTWDWAAAPEA
TELLGAIRAEFGEAISQAYTITVKHERYARLGELRDQVVAKLSGEEGQPSASEVKAAFGE
IEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAAD
VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLT
DILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALDARLNILGQMNQ
IIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG
ETKEAAEAARQRVLGITAEAEIGKIYIGKVERIVDFGAFVNILPGKDGLVHISMLSDARV
EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASEA

NT seq 2106 nt +upstreamnt +downstreamnt
gtgaacccggttatcaaaaaatttcagttcggtcagtcgaccgttaccctagagactggc
cgtatcgcccgtcaggcctccggcgcagtattggtcaccgttgacgacgacgtcagcgtg
ttggtgactgtcgtcggcgccaaacaagctgatccaggcaagggcttcttccctctgtcg
gttcactaccaagaaaaaacctacgccgccggtaaaatcccaggtggtttcttcaagcgt
gaaggtcgcccttccgagaaagaaacgctgacctcgcgcctgatcgaccgtccgatccgt
ccgctgttcccggaaggcttcatgaacgaagtgcaggttgtctgcaccgttctgtccacc
agcaagaaaaccgatcctgatgttgcggcaatgatcggtacttcggctgccctggcaatc
tccggcattccttttgatggtccgatcggtgctgcccgtgttgcattccacgaaagcacc
ggttacctgctgaacccgacttacgaacaactcgctgcgtccagcctggacatggtggtt
gccggtacgtcggaagccgtattgatggttgagtcggaagccaaagagctgaccgaagac
cagatgctgggtgccgtactgttcgcccacgacgaattccaggtcgttatccaggctgtt
aaagagctggctgccgaagctgccaaaccgacgtgggactgggctgctgctccagaagcc
actgaactgctgggcgcaatccgtgccgagttcggcgaagcgatctcccaggcttacacc
atcaccgtcaagcacgagcgctatgcacgtctgggcgagttgcgtgaccaggtggttgcc
aagctgtcgggcgaagaaggccagccttcggcgtctgaagtcaaagctgctttcggtgaa
atcgaataccgcaccgttcgcgaaaacatcgtaaacggcaaaccgcgtatcgatggtcgt
gacaccaagacagttcgccctttgaacatcgaagtgggcgtcctgccgaaaactcacggt
tctgcactgttcacccgtggcgagacccaggcgctggttgtcgcgacattgggtactgcc
cgtgacgcacagctgctggacacgctggaaggtgaaaagaaagacccgttcatgctgcac
tacaacttccctccgttctcggtaggcgagtgtggtcgcatgggtggtgccggccgtcgc
gaaatcggtcacggccgcctggcgcgtcgttccgttcaggccatgctgcctgctgctgac
gtgttcccgtacaccattcgtgtcgtatcggaaatcaccgaatccaacggttccagctcc
atggcatcggtgtgcggtgcttccctggcactgatggacgccggtgtaccgatgaaggca
ccggttgccggtatcgccatgggtctggttaaagaaggcgagaagttcgctgtactgacc
gacatcctgggtgacgaagaccacctgggcgacatggacttcaaagtagccggtacctcc
aaaggtgtgaccgcgctgcagatggacatcaagatcaaaggcatcaccgaagaaatcatg
gagatcgccctgggccaagccctggacgctcgcctgaacatcttgggtcagatgaaccag
atcattggtcagtcgcgtaacgaactgtctgccaatgcgccgaccatgatcgcgatgaaa
atcgacaccgacaaaatccgtgatgttatcggtaaaggtggcgcaaccatccgcgcaatc
tgtgaagaaaccaaagcgtcgatcgacatcgaagacgacggttcgatcaagatcttcggc
gagaccaaggaagcggcagaagcggcgcgtcagcgcgttctgggcatcaccgctgaagct
gagatcggcaagatctacatcggcaaggttgagcgcatcgtcgacttcggcgcattcgtg
aacatcctgccgggcaaagacggcctggttcacatctccatgctgagcgatgctcgcgta
gagaaagtgactgacatcttgaaagaaggtcaggaagtggaagtgctggtactggacgtg
gacaaccgcggccgtatcaagctgtccatcaaggacgttgctgccgccaaggcttcggaa
gcttaa

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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