KEGG   Candidatus Portiera aleyrodidarum BT-QVLC: PAQ_073
Entry
PAQ_073           CDS       T02306                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
plr  Candidatus Portiera aleyrodidarum BT-QVLC
Pathway
plr03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:plr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    PAQ_073 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:plr03021]
    PAQ_073 (rpoC)
   03400 DNA repair and recombination proteins [BR:plr03400]
    PAQ_073 (rpoC)
Enzymes [BR:plr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     PAQ_073 (rpoC)
Transcription machinery [BR:plr03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     PAQ_073 (rpoC)
DNA repair and recombination proteins [BR:plr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      PAQ_073 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C
Other DBs
NCBI-ProteinID: AFS18803
Position
89897..94015
AA seq 1372 aa
MKELVKKIKSKTYYEEFDAIKISLASPERIRSWSYGEVKKPETINYRTLKPERDGLFCAK
IFGPIKDYECICGKYKRMKHRGIICEKCGVEVTKTCVRRERMSHIELASPVAHIWFLKSL
PSRIGILLDMTLRDIERILYFEVFVVIEPGMTNLKKGQLLNEEKYFEALEEYGDEFNARM
GAEAIKFLLEDIELVEQLEKIRSEIKQVHSENKIKKLTKRLKLIEALKISGNKPSWMILE
VLPILPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELKAPEIIVRNEKRMLQ
EAVDALLDNGRRGRAIIGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVCPK
LRLNQCGLPKKMAIELFKPFIYSKLQRNGYAATIKAAKLLVEKEVPEVWDILADVICEHP
VLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAYNADFDGDQMAVHIPLTLESQLEA
RELMMSTNNLLSPANGEPIIVPSQDVVLGLYYMTRETCNGIGEGLIFSNINEVEIAYSNK
KVDLHSRIKVRLTDWIKDDKQKVSTQTSIRHTTVGRALLYGMLPNGMSFELINRPMKKKV
ISNLINLVYRNIGLKKAVNLADKLMYTGFKLATLSGASIGVNDFVIPTEKEHIINKAEKE
VKEIGKQYIYGLVTLGEKYNKVIEIWSKANDKVAKAMMNGISKSVVIDKSGKKVEQYSFN
SVFIMADSGSRGSAAQIRQLAGMRGLMTKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEIDCNTQEGLLMYSIIEGGDIIISITEKIL
GRILAKNILDLKGRILIKAGTLLDELWCKKIYRLGIDEVVVRSIIRCATQYGVCVMCYGR
DLSRGKLVNIGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRTLIKDNVQVKYGGIIRFH
NMKAVERIDKKLIVVSRYCAIYIIDKKGREKEYYRLPYGAELNIREGCFVDAGTTVANWD
PHTHPIISEISGYIKFIDIEEGLTMHSTVDEMTGISSIEILDLGIRPLLGRNKRPRIMLQ
DETGKDISLPGYNTPVQYILPGNALITVENGRKIGVGETISRIPVEALGNKDITGGLPRV
AELVEARKPKEYAILAEITGQILFGKETKGKRRIIINSEETGKKKEILINKGRQICVFEG
DKVEKGEVISDGPSNPHDILRLLGVEELSKYIINEIQEVYRLQGVGINDKHIEVIIRQML
RKVIIKDSGDSEFIKGDQVEVGSVLETNRKLYKLKKKIISFERILLGITKSSLSTPSFIS
AASFQETTRVLTEAAVKGSYDKLRGLKENVVVGRLIPAGTGLAYHNDRRRKI
NT seq 4119 nt   +upstreamnt  +downstreamnt
atgaaggagttggtaaagaaaataaaatcaaaaacatattatgaagagtttgatgcaata
aaaatttcattagcatctccagaaaggatacgatcatggtcatatggtgaggtgaaaaaa
ccagaaacaattaattatcgtacattaaaacctgagagagatggattgttttgcgcaaaa
atatttggtcctattaaagattatgaatgtatttgtggtaaatataaacgaatgaaacat
agaggaataatatgtgaaaaatgtggcgttgaggttactaaaacctgtgtacgcagagaa
agaatgagtcatattgaattagcatctcctgttgcccatatatggtttttaaaatcatta
ccaagtaggattggcattttattagatatgacgttaagagatatagaaagaattttatat
tttgaagtctttgtagtaatagaaccaggtatgacaaatttaaagaaaggtcaattatta
aatgaagaaaaatattttgaagcattagaagaatatggtgatgaatttaatgcaagaatg
ggtgcagaagctataaagtttttgttagaagacatagagttagtagaacaactagagaaa
atcagaagcgaaattaaacaagtacattcagaaaataaaataaaaaaattgactaaacgg
ttaaaattaatagaagcattaaaaatatcaggaaataaacctagttggatgattttagag
gttttacctatattacctccagatttaagacctttagtaccattggatggaggtaggttt
gcaacgtcagatttaaatgatttatataggcgtgttatcaatagaaataatagattaaaa
agattaattgaattaaaagctccagaaatcattgttcgcaatgaaaaaagaatgttacaa
gaagcagtagatgcattgttagataacggaagaagaggaagagcaattataggttcaaac
aaaagaccgttaaaatcattagcagatatgataaaaggaaaacagggaagatttcgtcaa
aacttattaggtaaacgtgtagattattcaggaaggtcggtaattacagtttgtccaaaa
ttaagattaaatcaatgtggtttacctaaaaaaatggctatagaattatttaaaccgttt
atatattcaaaattacaacgaaatggatacgcagcaactataaaagcagcaaaacttttg
gttgaaaaagaagtgccagaggtctgggacatattagctgatgtaatttgtgaacatcca
gttttgttgaatagagcccccactttacatagattgggtattcaagcgtttgaaccaatc
ttgatagaaggtaaagcaatacaattacatccattggtctgtgcagcttataatgcagat
tttgacggggatcaaatggcagtgcatatacctttaacattggaatcacaattagaagct
agagaattaatgatgtcaacaaataatttattatctccagcaaatggagaacctataatt
gtgccttcacaggatgtagttttaggtctatattatatgacaagggagacttgtaatgga
ataggtgaagggcttatcttttctaacataaacgaagtagaaatagcttatagcaataaa
aaagtggacttacattctcgtataaaggtccgtttgacagattggataaaagatgataaa
caaaaagtaagtacacagacatcaatacgacatacgactgtaggtcgtgctcttttatat
ggtatgttgccaaatggaatgagttttgaattaataaatagaccaatgaaaaaaaaagta
atatctaatttgattaatttagtttatagaaatattggattaaaaaaagctgtgaactta
gcagataaacttatgtatacaggttttaaactagctactttgtcaggtgcatcaattggc
gttaatgattttgttataccgactgaaaaagaacacataataaacaaagctgaaaaagaa
gtaaaagaaataggtaaacaatatatttatgggcttgtaactttaggagaaaaatataat
aaagttatagaaatttggtccaaagctaatgataaagttgcaaaagctatgatgaatggt
atatctaaatcagttgtgatagataaatctggaaaaaaagttgaacaatattcttttaat
agtgtttttattatggctgattcaggatccagaggaagtgcagctcaaattagacaatta
gcaggaatgcgtggcttgatgacaaaaccagatgggtctattatagaaacgcctataaca
gcaaactttcgtgaaggattaaatgttctacaatattttatatcaactcatggtgccaga
aaaggcttagcagatacagcattaaaaacagctaattcaggatatttaactagaagatta
gtagacgtagcacaagatgtcgtgatcacagaaatagactgtaatacacaagagggttta
ttaatgtattcaattatagaaggaggggatattattatctcaatcactgaaaaaatttta
ggtagaattttagcaaaaaatattttagatttaaaggggagaattttaattaaagcaggc
acactgttagatgaactatggtgtaaaaaaatttatagattaggaatagacgaggttgtt
gtacgtagtattattagatgtgcaacacaatatggtgtttgcgttatgtgttatggtagg
gatttatcaagagggaagttagtaaatattggtgaatcagtaggggtaatagctgcgcaa
tcaataggcgagccaggtactcaattaactatgcgtacatttcatataggtggagcagca
tcacgaacgttaataaaagataatgttcaagtaaaatatggtggtataataagatttcat
aatatgaaagcagtagaacgaattgataaaaagttaatagttgtgtctcgttattgtgct
atatatataatagacaaaaagggtagagaaaaagaatactatagactaccatatggtgca
gaactaaatattagagaaggatgttttgttgacgcaggtacaacagtagcaaattgggac
cctcatacacatccaataatttcagaaatatcaggttatataaagtttatcgatattgag
gaaggtttgacgatgcatagtactgtggatgaaatgaccggtatctcttcgatagaaata
ttagatttaggtattagacccctactaggaagaaataaaagaccaagaattatgttacaa
gatgaaaccggaaaagatatatcattgcctggttataacacgcctgtacaatatatttta
cctggtaatgctttgattacagtagaaaatggtagaaaaataggcgtaggggaaacaatt
tcaagaatacccgtagaagcattaggaaacaaagacataactggagggttaccccgtgtt
gcagaattggtagaggcaagaaagcctaaagaatatgcaatattggcagaaataacaggt
caaattttatttggtaaggaaacaaaaggtaaacggcgaataataataaattcagaagaa
acaggtaaaaaaaaagaaatattaattaataaaggccgtcaaatatgcgtttttgaaggg
gataaagtagagaaaggagaagtaatttctgatggcccaagtaatccacatgatatatta
cggttgttgggtgtagaggagttatcaaagtatattataaatgagatacaagaagtttat
agattacagggtgttggaataaacgataaacatattgaagttataataaggcaaatgtta
cgtaaggtaataataaaagattcaggagatagtgaatttataaaaggtgatcaagttgaa
gtaggatcagtattagaaacaaatagaaagttatataaattgaaaaaaaaaataattagt
tttgaaagaatattattaggtattactaagtcatcgttatcaacaccatcatttatttca
gcagcatcatttcaagaaacaacacgtgttttaacagaagcagcagttaaaggcagctat
gataagttaagaggtttaaaagaaaatgtcgttgtggggagattaattcctgcaggtact
ggtttagcataccacaatgaccgtcggagaaaaatttag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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