KEGG   Photorhabdus laumondii subsp. laumondii TTO1: plu4525
Entry
plu4525           CDS       T00149                                 
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) (PNPase) (CAP87K)
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
plu  Photorhabdus laumondii subsp. laumondii TTO1
Pathway
plu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:plu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    plu4525 (pnp)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:plu03019]
    plu4525 (pnp)
   03016 Transfer RNA biogenesis [BR:plu03016]
    plu4525 (pnp)
Enzymes [BR:plu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     plu4525 (pnp)
Messenger RNA biogenesis [BR:plu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     plu4525 (pnp)
Transfer RNA biogenesis [BR:plu03016]
 Prokaryotic type
  tRNA degradation factors
   plu4525 (pnp)
SSDB
Motif
Pfam: RNase_PH PNPase RNase_PH_C S1 KH_1 S1_2 KH_2 aRib CsrA DUF3016 SLS1_KH2
Other DBs
NCBI-ProteinID: CAE16897
Pasteur: plu4525
UniProt: Q7MYZ0
Position
complement(5284616..5286745)
AA seq 709 aa
MLNPIVRKFQYGQHTVAIETGMMARQATAAVMVNMDDTAVFVTVVGQKKVKEGQDFFPLT
VNYQERTYAAGRVPGSFFRREGRPGEGETLVARLIDRPLRPLFPDGFLNEVQIVATVVSV
NPQVNPDIVAMIGASAVLALSGIPFNGPIGAARVGYINDQYVLNPTSDELKNSRLDLVVS
GTAGAVLMVESEADILTEEQMLGAVVFGHEQQQVVIDNINALAAEAGKEKWNWVPESVNQ
ALHDRVAGLAEDRLGDAYRITEKQERYAQVDAIKEEVTAALLEQDEALEEAEIHEILGSL
EKKVVRSRVLRGEPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTER
DAQIIDELMGERTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVAAVMPKANE
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDDNFVVLSD
ILGDEDHLGDMDFKVAGSCEGISALQMDIKIEGITREIMQIALNQAKGARLHILSVMEQA
INSPRNDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT
DGEKAKHAISRIEEITAEIEVARIYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVADYLQVGQEVSVKVLEIDRQGRVRLSIKEATVGVIVEDTPVAPQSAE
NT seq 2130 nt   +upstreamnt  +downstreamnt
ttgcttaatccgattgttcgtaaatttcaatatggccaacataccgttgctatcgaaaca
ggtatgatggcacgccaggccacagctgctgtcatggtcaatatggatgacacggctgta
tttgtcactgttgttggtcaaaagaaagtaaaagaaggtcaggatttctttcctctgact
gttaactatcaggagcgtacttatgctgctggtcgtgttcctggcagtttctttcgtcgt
gaaggtcgtccaggtgaaggagaaacgttagtcgctcgtttgattgatcgtcctctgcgt
cctctgttcccggacggtttcctgaacgaggtgcagattgtagcaacagttgtttctgtt
aacccgcaagttaatccagatattgttgcaatgatcggtgcttctgctgtgctggcacta
tctggtatcccgttcaatggtccaattggtgctgctcgcgttggttatattaatgatcag
tatgtgctgaacccaaccagtgatgagctaaaaaatagccgtttagatctggtggtttca
ggtactgctggtgctgttctgatggttgagtctgaagcagacattctaactgaagagcaa
atgttaggtgcggtagtattcggtcatgaacaacaacaggtggttattgataacattaat
gcgttggctgcggaagcaggcaaagaaaaatggaattgggtgccagaatctgttaatcaa
gcgttgcatgaccgtgtagctggattggcagaagaccgtttgggtgatgcttatcgtatc
actgaaaaacaggagcgttatgctcaggttgatgctatcaaagaggaagttacggcagca
ctgctggaacaggatgaagctttagaggaagctgaaatccatgaaattctgggtagctta
gagaaaaaagttgttcgtagccgcgtcttgcgtggtgaaccacgtattgatggtcgtgaa
aaagatatggtgcgtgcattggatgtacgtactggtgttctgcctcgaactcatggctct
gcgctgtttacccgtggtgaaactcaggctttggttactgcgactttgggtacagaacgt
gatgcacagatcattgacgagttgatgggagagcgcacagatcgtttcctactgcactac
aacttcccgccatattctgttggtgaaacaggtatgatgggttcaccaaaacgtcgtgaa
attggtcatggtcgtttggccaaacgtggtgtggcggcagttatgccaaaagctaacgaa
ttcccatataccgttcgggtcgtttctgaaatcacggaatcaaacggctcgtcttcaatg
gcatctgtttgtggtgcatctcttgcgttgatggatgcaggtgtgccgattaaagctgct
gttgctggtattgcaatgggattagtgaaagaagacgataattttgttgttctgtctgac
atcttgggtgatgaagatcatttgggagacatggactttaaagtagcgggtagctgtgaa
ggtatcagcgcgctgcaaatggacatcaaaattgaaggcattacccgtgaaattatgcaa
attgctctgaatcaggcaaaaggtgcgcgtttgcatatcctgagtgtaatggaacaggca
attaatagcccacgtaatgatatttctgaatttgcaccacgtattcacactattaagatc
aatcctgataagatcaaagatgttatcggtaaaggtggttcagttatccgtgcactgaca
gaagaaaccggtaccaccattgaaattgaagatgatggcacagtgaaaattgctgcaact
gatggtgaaaaagcaaaacatgccatcagtcgcattgaagaaataactgctgagatcgaa
gtagctcgcatttacactggtaaagtaacccgtatcgttgattttggcgcgtttgttgct
atcggtggtggtaaagaaggtctggtacatatttctcagattgctgataagcgtgttgag
aaagtggctgactatttgcaggttggtcaggaagtctcagttaaagttctggaaattgat
cgccagggtcgtgttcgtctgagtattaaagaagcgacagtcggagtaattgtcgaggat
acaccagtggcaccacaatcagcagaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   OC (1)   
   PASTEUR (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (11)   
   Pfam (11)   
All databases (28)   

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