KEGG T06601: FOB45

Pseudomonas luteola: FOB45_18510

Entry

FOB45_18510       CDS       T06601

Symbol

topA

Name

(GenBank) type I DNA topoisomerase

K03168

DNA topoisomerase I [EC:5.6.2.1]

Organism

plul Pseudomonas luteola

Brite

KEGG Orthology (KO) [BR:plul00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:plul03032]
    FOB45_18510 (topA)
   03400 DNA repair and recombination proteins [BR:plul03400]
    FOB45_18510 (topA)
Enzymes [BR:plul01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     FOB45_18510 (topA)
DNA replication proteins [BR:plul03032]
Prokaryotic type
  DNA Topoisomerases
   FOB45_18510 (topA)
DNA repair and recombination proteins [BR:plul03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      FOB45_18510 (topA)

SSDB

Motif

Pfam:

Topoisom_bac Topo_Zn_Ribbon TOP1_ZnF Toprim zf-C4_Topoisom Toprim_4 DUF2399 Toprim_2 Ribosomal_L10

Other DBs

NCBI-ProteinID:

QEU29648

UniProt:

A0A5P2SF62

Position

1:complement(2399304..2401916)

AA seq 870 aa
MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSAGASKESATKGRKSAAEA
PALSPKEKAKRQLIARMGVDPEHGWKAHYEILPGKEKVIEELKRLAKEADTVYLATDLDR
EGEAIAWHLREAIGGDESRFKRVVFNEITKKAIQDAFSKPGELDINRVNAQQARRFLDRV
VGYMVSPLLWQKIARGLSAGRVQSVAVKLLVEREREIRAFVPAEYWEVHADLANPKNAKA
RFEVVRQNGEAFKPLNEAQASAAVEKLKASSYSISKREDKPTSSRPSAPFITSTLQQAAS
NRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSNDAITMARAFIENEFGDKYLPAKPNF
YSSKEGAQEAHEAIRPSDVNTRPDQLSGMERDAERLYDLIWRQFIACQMPPAEYLSTTVT
AKAGEFELRAKGRILKFDGFTRVLSQQSKPGEDDVLPEMNQGDAMKLLKLDPTQHFTKPP
ARFSEASLVKELEKRGIGRPSTYAAIISTIQDRGYATVHNRRFYAEKMGDIVTDRLGESF
SDLMDYGFTASMEGDLDTVAQGELDWKNLLDEFYSDFKKKLEAAESAEGGMRANVPTLTD
IPCPTCSRPMMIRTASTGVFLGCSGYSLPPKERCKGTINLVPGDEIAEDDEGESESRVLR
GKHRCDICGTAMDAYLIDEHRKLHICGNNPDCSGYEVETGNYRIKGYEGPSLECDKCGSE
MQLKTGRFGKFFGCTNPECKNTRKLLKNGEPAPPKMDAIAMPELKCEKVNDTYVLRDGAS
GLFLAASQFPKNRETRAPLVSELLPHKDEIDPKYHYLLSAPAKDPDGRSAVIRFSRKTKE
QYVQTEENGKPTGWKAYFDNGKWKVEDKRS

NT seq 2613 nt +upstreamnt +downstreamnt
atgggcaaatcgctggtcatcgtggaatccccggccaaggccaagaccatcaacaagtat
ttgggcaaccagtacgtggtgaagtcgagtatcggccatatccgtgacctgcctaccagt
gggtcggcaggcgcgtcaaaagagtccgccacgaaaggacgcaagtctgctgccgaagct
ccagccctttctccaaaggaaaaggccaagcgccagcttatcgctcgcatgggggtcgac
cctgagcatggctggaaggcgcactacgagatcctgcctggaaaggaaaaggtgatcgaa
gagctcaagcgtctggctaaggaagctgacactgtttatctcgcaaccgacttggaccgc
gaaggggaagccattgcctggcatcttcgtgaggccatcggaggagacgaaagccgattc
aagcgggtcgtcttcaacgaaatcactaaaaaagcgattcaggatgcgttctccaagccg
ggcgagctggatatcaatcgagtcaatgctcagcaggccaggcgctttctggaccgtgta
gtgggctacatggtctcgcctctgctatggcagaagatcgcccgagggctttcggctgga
cgtgttcagtccgttgcggtcaagctgcttgtggagcgtgagcgggaaattcgtgccttc
gtccctgcagagtactgggaagttcacgccgatttggcgaaccccaagaatgccaaggcg
cgttttgaggtcgtccggcaaaacggcgaagcattcaagccgttgaacgaggcgcaggca
agtgctgccgtcgagaagttaaaggcttccagctacagcattagcaagcgtgaagacaag
cctaccagcagccgaccttccgctccgttcattacatcgactttacaacaggctgccagc
aatcggctgggctttggtgtaaagaaaaccatgatgatggcccagcgtctttacgaggcg
ggttatatcacttacatgcgtaccgattcgacgaacctgtccaacgatgccattaccatg
gctcgggcgtttatcgaaaatgaattcggcgacaaatacttaccggccaagcctaatttc
tacagcagcaaggaaggtgcgcaggaggctcacgaagcaattcgtccgtctgacgtaaac
acgcgtcctgaccagctgtctggcatggagcgagacgccgaacgcttgtacgatttgatc
tggcgtcagttcattgcctgtcagatgcctcctgcggaatatctttctacgaccgttacg
gcaaaggccggtgagtttgagttgcgcgccaaagggcgaatcctcaagttcgatggcttt
acccgagttctatcgcaacagagcaagcctggcgaagacgacgtactgcccgaaatgaac
cagggcgatgccatgaagctgctgaagctggatcccactcagcactttaccaagccgccg
gcacgtttctccgaggccagtttggtcaaggagctggaaaagcgcggtattggtcgtccg
tctacctatgcagccattatttccacgattcaggatcgcggctatgccactgtgcataat
cgccgtttctacgcggaaaagatgggtgacattgttactgaccggctgggcgagagcttc
tctgacctcatggattatggttttaccgccagcatggaaggtgatctcgataccgtagcg
cagggcgagcttgactggaaaaacctgctggatgagttctatagcgatttcaagaaaaag
ctagaagccgccgagagcgctgaaggggggatgcgtgcaaatgtgccgactctcacggat
atcccttgtccgacgtgtagccggccgatgatgattcgtaccgcttcaacgggtgtattc
cttggatgctcgggttatagcctgccgcccaaagagcgttgcaaaggaacgatcaacctt
gttccgggtgacgaaattgctgaggacgacgaaggcgagtcggaatcgcgtgtgctgcgc
ggcaagcaccgctgcgatatttgcggaaccgcgatggatgcttacctgattgacgagcat
cgcaagctccacatctgtggcaataaccccgattgctcgggttatgaagttgaaaccggt
aactatcgcatcaagggctatgaagggccctcactagagtgtgacaagtgcggcagtgaa
atgcagctcaagacgggtcgtttcggcaaattctttggatgtaccaatcctgagtgcaag
aatacgcgcaagctgctgaagaacggcgagccggctccgcccaagatggatgccattgca
atgcctgagctcaagtgcgagaaagtcaacgatacgtatgtattgcgagacggagcttca
ggtctgttcctggcggccagccagtttccaaagaatcgcgagactcgcgcaccgttggtc
agcgagctgttgccgcacaaggatgaaatcgatccgaaataccattatctattaagtgca
ccggccaaagacccggacggccgctctgctgttattcgctttagtcgcaagacgaaggag
caatacgtacagacagaagagaatggtaagccgaccggttggaaagcctatttcgataat
gggaagtggaaggtagaagacaagcgtagctga

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (18)   

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