KEGG   Photorhabdus laumondii subsp. laumondii DSPV002N: A4R40_02150
Entry
A4R40_02150       CDS       T05478                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
plum  Photorhabdus laumondii subsp. laumondii DSPV002N
Pathway
plum03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:plum00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    A4R40_02150 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:plum03021]
    A4R40_02150 (rpoB)
   03400 DNA repair and recombination proteins [BR:plum03400]
    A4R40_02150 (rpoB)
Enzymes [BR:plum01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     A4R40_02150 (rpoB)
Transcription machinery [BR:plum03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     A4R40_02150 (rpoB)
DNA repair and recombination proteins [BR:plum03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      A4R40_02150 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45 SPG4
Other DBs
NCBI-ProteinID: AWK40405
UniProt: A0A6L9JQJ9
Position
464440..468468
AA seq 1342 aa
MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQNGLEAAFRSVFPIQ
SYSGSSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRAMNYSTEEILNLFFSKTIFEIRDNRLQMT
LVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDEVNRIEVPVEYIAGKVVARD
YIDVNTGEIICAANMELSLDLLARLSQSGHKSIETLFTNDLDHGAYISETLRVDPTNDRL
SALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLSREEVEGSGIL
SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRLVRDGVVT
DEIHYLSAIEEGNFVIAQANTVLDDEGHFVEDLITCRNYGESSLFNREQVEYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTSVAKR
GGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLRQAKKDL
TEELQIFEAGLFARIRSVLIAGGIEAEKLDKLPRGRWLELGLADEEKQNQLEQLAEQYDE
LKAEFEKKLDAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK
LREFIQKAYNLGDETRQKVDLSTFSDEEVMRLAENLKKGMPIATPVFDGAKEKEIKELLK
LGDLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEGE
NT seq 4029 nt   +upstreamnt  +downstreamnt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaagcgtccgcaa
gtgttggacgtaccttatctcctttctatccaacttgactcgttccagaagtttatcgag
caagatccagaaggccagaatggtttagaagcggcattccgttctgtattcccaatccag
agctacagtggcagttcggagctgcaatacgttagctaccgtcttggtgagccagtgttt
gatgttaaagagtgccagattcgtggtgtaacttattctgcacctctgcgcgttaagctg
cgtctggttatctatgaacgtgaagcaccggaaggtacggtcaaagatatcaaagagcaa
gaagtctacatgggtgaaattccgctcatgactgacaacggtacttttgttatcaatggt
actgagcgggttattgtctcccagttgcatcgtagtcctggtgtattctttgacagcgat
aagggtaaaactcactcatccggtaaggtactgtataacgcacgtattattccttaccgt
ggttcttggttagatttcgaattcgatccaaaagataatctgtttgtgcgcattgaccgc
cgtcgtaaattgccggcaacgattattctgcgtgcaatgaattacagcactgaagagatt
ttgaacctgttcttcagtaaaacgattttcgaaattcgtgacaacagactgcaaatgacg
ctggtaccagaacgtttgcgtggtgaaaccgcttcttttgatattgaagcaaacggcaag
gtttatgttgaaaaaggccgtcgtattaccgcacgtcatatccgccagttagaaaaagat
gaagtgaaccgtattgaggttcctgttgaatacattgcgggtaaagttgttgcaagagac
tacattgatgtcaacacaggtgaaattatctgtgctgctaacatggagctctctttagat
ctgttggcacgtttgagccaatctggtcataaatctatcgaaacattgttcaccaacgat
ttagatcacggcgcatatatttccgagacacttcgtgttgatccaaccaatgaccgtttg
agtgctttggttgagatttatcgcatgatgcgtcctggtgagccaccaacccgtgaagcg
gcagaaaatctgtttgaaaatctgttcttctcagaagatcgttatgatctttctgcggtt
ggtcgtatgaaattcaaccgctcattgagccgtgaagaagtcgaaggatctggtattctg
agtaaagatgacatcattgatgtcatgaaaaaactcattgatatccgtaatggtaaaggt
gaagtcgacgatatcgaccacttaggtaaccgtcgtatccgttctgttggtgagatggca
gaaaaccagttccgtgttggtctggtacgcgttgagcgtgcagtgaaagagcgtctgtct
ctgggtgatctggatacactgatgcctcaggatatgatcaacgctaagccgatttcagcc
gcagtgaaagaattctttggttccagccagctgtctcagtttatggaccaaaacaaccca
ctttctgaaatcactcacaaacgccgtatctctgcgttgggtccaggtggtttgacccgt
gagcgtgcgggcttcgaagtgcgtgacgtacatccaacgcactatggtcgagtatgtcca
atcgaaaccccggaaggtccgaacatcggtctgattaactcattgtctgtttatgcgcag
actaacgagtatggtttccttgaaaccccatatcgtctggttcgtgatggtgttgttact
gatgaaattcactatctgtctgcgattgaagaaggtaacttcgttatcgcacaggcaaac
accgtattagatgacgaaggccacttcgttgaagatctgataacttgccgtaattatggt
gaatccagcttatttaaccgtgagcaggttgaatatatggacgtttccacccagcaggtg
gtttccgttggtgcttccttgatcccattcttggaacacgatgacgcaaaccgcgcattg
atgggtgcaaacatgcaacgtcaggctgttcctactctgcgtgctgataagccgttggtc
gggacaggtatggaacgtgcagtagccgttgactcaggtgtaacttctgttgctaaacgc
ggtggtgtggttcaatacgttgatgcatctcgtatcgttatcaaagtaaatgaagacgaa
atgtatccgggtgaagcaggtattgatatttataacctgactaaatatacccgttctaac
cagaacacctgtattaaccagatgccatgtgtctctctgggcgaaccggtggaacgtggt
gacgtactggctgatggtccatctactgacttgggtgaactggctctgggccagaacatg
cgcgtagcgttcatgccgtggaatggttataacttcgaggactccatcttagtttctgag
cgtgtcgtccaggaagatcgctttacgaccattcatatccaggaactggcttgcgtatct
cgtgataccaaattagggcctgaagagatcacggctgacatccctaacgtaggtgaggct
gcactctccaagctggatgaatccggtattgtttacatcggtgcggaagtaaccggcggt
gacattctggttggtaaagtgacacctaaaggtgaaactcagctgacgccagaagaaaaa
ctgctgcgtgctatcttcggtgagaaagcgtctgatgttaaagactcttctctgcgcgta
ccaaatggcgtatccggtacggttatcgacgtacaggtatttacccgtgatggtgtagaa
aaagataaacgtgccttggaaattgaagagatgcagctgcgtcaggctaagaaggacctg
acagaagagttgcaaatctttgaagctggcctgtttgcacgtatccgttctgttttgatt
gcaggcggcatcgaagctgagaaactggataaactgcctcgtgggcgttggttggaattg
ggtctggctgatgaagagaaacagaatcagttggaacagttggctgaacagtatgacgaa
ctcaaagctgagttcgagaaaaaactggatgctaaacgccgtaagatcacacagggtgat
gatctggcaccgggtgtgctgaaaatcgtcaaagtttatctggcggttaaacgtcagatt
cagcctggtgataagatggcaggtcgccacggtaacaagggtgttatctccaagatcaac
ccgatcgaagatatgccttacgatgaaaacggcactccggtagatatcgtactgaaccca
ctgggcgtaccatcacgtatgaacattggtcagatcttggaaacgcatctgggcatggct
gcgaaaggtattggcgacaagatcaatgcgatgctgaaacagcagcaggaagttgccaaa
ctgcgtgaatttatccagaaagcttataacctgggtgatgaaacccgtcagaaagttgat
ctgagcactttctctgatgaagaagttatgcgtttggcagaaaacctgaaaaaaggcatg
ccaattgcgacaccagtgtttgatggtgcgaaagagaaagaaataaaagagctgctgaaa
ttgggtgacttgccaacttctggtcaaattaccctgtttgatggtcgtaccggtgagcaa
tttgagcgtcaggttaccgttggctacatgtatatgctgaagctgaaccacttggtggat
gacaaaatgcacgctcgttcaacgggttcgtacagtctggttactcagcaaccgttgggt
ggtaaggcgcagttcggtggtcaacgcttcggtgagatggaagtgtgggcattggaagca
tatggtgccgcgtacaccttgcaggaaatgctcaccgtcaagtccgacgatgttaacggc
cgtaccaagatgtataaaaacatcgtggatggcaaccaccagatggagccaggtatgccg
gaatccttcaacgtattgttgaaagagatccgctctctgggtatcaacatcgagctggaa
ggcgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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