KEGG T06578: CPA52

Pseudoalteromonas marina: CPA52_08745

Entry

CPA52_08745       CDS       T06578

Name

(GenBank) TIGR01621 family pseudouridine synthase

K06177

tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]

Organism

pmaa Pseudoalteromonas marina

Brite

KEGG Orthology (KO) [BR:pmaa00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:pmaa03009]
    CPA52_08745
   03016 Transfer RNA biogenesis [BR:pmaa03016]
    CPA52_08745
Enzymes [BR:pmaa01000]
5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.28  tRNA pseudouridine32 synthase
     CPA52_08745
    5.4.99.29  23S rRNA pseudouridine746 synthase
     CPA52_08745
Ribosome biogenesis [BR:pmaa03009]
Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    CPA52_08745
Transfer RNA biogenesis [BR:pmaa03016]
Prokaryotic type
  tRNA modification factors
   Psudouridine synthases
    CPA52_08745

SSDB

Motif

Pfam:

PseudoU_synth_2

Other DBs

NCBI-ProteinID:

ATG58325

Position

complement(1883823..1884491)

AA seq 222 aa
MNLILNVVYEHSDFYVVEKPAELSFHSEDGPGFVVLAERQFNEKLYAVHRLDKVTSGLII
LARNKSAAATFTELFAQHFIDKFYLAITDSKPKKKQGWVKGDMAKSRRGTYKLLASNLNP
AITRFYSISFKAGFRAFILKPFSGKTHQLRVALKSIGSPILGDIAYSGTASDRTYLHAYA
LSFTWQGENLQFTLLPSNGDAFLTLLQHDNFQAWRSPWELDW

NT seq 669 nt +upstreamnt +downstreamnt
atgaacttaatattaaacgtggtatatgagcattctgatttttatgttgtcgaaaaacca
gcagaactcagctttcattcagaagatggacctggctttgttgtgctagctgagcgacaa
tttaatgagaaactttacgcagttcatagactagataaagtaacttcgggtctaattatt
ttagcaagaaataaaagcgctgcagcaacgtttacggagctttttgcacaacattttatt
gataaattttatcttgctattacagactctaaacctaaaaaaaagcaaggttgggttaaa
ggagacatggccaagtcgcgccgtggtacctataagcttttggcatctaatttaaatcct
gcaattacccgtttttattcaattagttttaaagcgggttttagagcgtttattttaaaa
cctttctcgggtaaaacacaccagctaagagttgccttaaaaagtataggatccccaata
ttgggtgatattgcttactcaggcacggcttcagatagaacatatttgcatgcttatgca
ttgagctttacttggcagggtgagaacttacaatttacgcttttacctagtaacggtgat
gcgtttttaaccctattacaacatgataattttcaagcatggcgttcgccatgggaactg
gactggtaa

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (1)   
   Pfam (1)   
All databases (10)   

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