KEGG   Pseudoalteromonas marina: CPA52_13145
Entry
CPA52_13145       CDS       T06578                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
pmaa  Pseudoalteromonas marina
Pathway
pmaa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pmaa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CPA52_13145
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pmaa03019]
    CPA52_13145
   03016 Transfer RNA biogenesis [BR:pmaa03016]
    CPA52_13145
Enzymes [BR:pmaa01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     CPA52_13145
Messenger RNA biogenesis [BR:pmaa03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     CPA52_13145
Transfer RNA biogenesis [BR:pmaa03016]
 Prokaryotic type
  tRNA degradation factors
   CPA52_13145
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 HTH_12 OB_Dis3
Other DBs
NCBI-ProteinID: ATG59121
Position
complement(2835066..2837507)
AA seq 813 aa
MSNQDPNLSREQEKYENPVPSREFILTHLQERSKPANYAQLCEELAVNDEERQIAFKRRL
RAMERDGQLYFNKFKCYALIDEAGLTKGKVIGHRDGFGFLEVEGESKDWFIAKHQMNMVL
HGDIVLAKGTKRGSGSKCDARIIKVLTNERAPIVGRYFVEHGVAVVVAEDPRITQDIMIL
PGNENGARHNQMVQVKITQNPSRNMNAVGKVVDVLGEHLAPGMEIEVALRNHDIPHVWPE
DVDAQVAHLGEFVEDADKQGRVDLRDLPLVTIDGEDARDFDDAVYCEPKKSGGWRLWVAI
ADVSHYVGMNTPLNKEAIARGNSVYFPEQVIPMLPKVLSNGLCSLNPKVDRLCMVAEMTV
SAAGKLSGYKFYEAVMNSHARLTYTKVNAILQNDEKLREEYAPVVPHLTDLQQMYMALKS
ARQERGAIEFETLETRFVFNAHRKIESIVPVIRNDAHKLIEECMILANVSAAKLLEKHEA
SALYRVHDEPDSEKLGNFTQFLTELGIQSTLGDEPTPKEITQILAKLGERPEAELIQTML
LRSMKQAVYQPDNIGHFGLALSAYAHFTSPIRRYPDLVVHRAIKAVLKAQGQQTSGAYAY
TDDEVDQLGEQCSTTERRADDATREVADWLKCEFMQDHVGDEFNGVISSVTNFGLFIRLD
DLQIDGLIHVTNLGDEFFAHDAAKHCLIGEHSHTVYRLGDKVTVQVASVSLDDRRINLVL
KGDVAQDRYSRRRAPKGKGPASVRSQLKAGKVPGKKSDDKPKGKKKPAGKGKAAGKSAVK
ASEGTAKKKPKKKSAKKPKRPGKNARKRTSPGA
NT seq 2442 nt   +upstreamnt  +downstreamnt
atgtcaaaccaagatccaaatctcagtcgagaacaagaaaagtacgaaaaccccgtccct
agccgtgagtttatacttactcatcttcaagagcgttcaaaaccagctaactacgcacaa
ttatgtgaagaactagccgttaatgatgaagagcgtcaaattgcatttaaacgtcgcctt
cgtgccatggagcgtgatggtcagttatattttaataaatttaaatgctatgcacttatt
gacgaagccggtttaaccaaaggtaaagtaataggccacagagacggttttggcttttta
gaagttgaaggcgagagcaaagattggtttattgccaaacatcaaatgaacatggtgtta
catggcgacattgtactagctaaaggtacaaagcgtggctctggctcaaaatgcgatgcc
cgtattattaaagtgcttaccaacgagcgcgcccctattgtagggcgttattttgttgag
catggtgttgcagttgtagtcgctgaagatccgcgtattacgcaagacatcatgatttta
ccaggcaacgaaaacggtgcccgccacaaccaaatggtgcaggttaaaatcactcaaaac
cctagccgcaatatgaacgcagtaggtaaagtggttgatgtactaggtgagcatttagcg
ccaggtatggaaattgaagttgcccttcgtaatcacgacattccgcatgtttggccagaa
gacgttgacgcacaagtcgcccacttaggcgaatttgtagaagatgcagacaaacaaggc
cgcgtagatttacgcgacttaccgcttgttacgatagatggcgaagacgcccgcgacttt
gacgacgcagtgtactgtgagcctaaaaaatcaggcggttggcgtttatgggttgctatt
gccgatgtgtcgcattatgtaggcatgaatacaccacttaacaaagaagccatcgcacgt
ggtaactcagtgtattttcctgagcaagttattccaatgctaccaaaagtactgtctaac
gggttgtgttcgcttaaccctaaagtagaccgcctttgtatggttgctgaaatgaccgta
tcagcggcaggtaaattgtcgggttataaattttacgaagcggtgatgaattctcacgcc
cgtttaacttacactaaagtaaacgccattttacaaaatgacgaaaagcttcgcgaagaa
tacgcacccgtagtgccacatttaactgatttacagcaaatgtacatggcgcttaaatca
gcacgccaagagcgtggtgctattgaatttgaaacactcgaaacacgctttgtatttaat
gcacaccgcaaaatagagtctattgtgcctgttatccgcaacgacgcgcacaaactcatt
gaagaatgtatgattttagccaacgtgtcagcggctaaattactcgaaaagcacgaggcc
agtgcactttaccgtgtgcatgatgaacccgacagtgaaaagctaggtaactttacacag
tttttaactgagttagggattcagagcacattaggtgacgaaccaacgcctaaagaaatt
acgcaaatattagctaaattaggcgagcgcccagaggccgagcttattcaaactatgctg
ctgcgctcaatgaaacaagcggtttatcagccagataacataggtcactttggtttagcg
ttatcggcttatgcacactttacatcgcctattcgtcgttacccagatttagttgtacac
cgtgcaattaaagcggtactaaaagcacagggccaacaaacgtcaggcgcatacgcgtac
actgacgatgaagtagatcaattaggcgagcagtgttcaaccactgagcgccgtgcagac
gacgcgactcgcgaagtagccgactggcttaaatgtgagtttatgcaagaccacgttggc
gatgagtttaacggggttatttcgtcggttacaaactttggtttatttatacgattagac
gatttacaaattgatggtttaattcacgttactaatttaggcgacgagttttttgcacat
gatgctgcaaaacattgcctgattggtgaacacagccacaccgtttaccgacttggcgat
aaagtaacggtgcaagttgcctcagtcagtttagacgaccgccgtataaacttagtactt
aaaggcgatgtagcacaagataggtattcacgccgtcgtgcacctaaaggtaaaggccct
gcgagtgtacgctcacaattaaaagcaggcaaagtaccgggtaaaaagtcagacgacaag
ccaaaaggtaaaaaaaagccagccggtaaaggcaaagctgctggtaagtcggcggttaaa
gccagcgaaggcaccgcaaagaaaaaaccgaaaaagaaatcggctaaaaagcctaaaaga
ccaggcaaaaatgcccgtaaacgtacaagcccaggagcataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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