KEGG   Prauserella marina: BAY61_02700
Entry
BAY61_02700       CDS       T04988                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
pmad  Prauserella marina
Pathway
pmad03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pmad00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BAY61_02700
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pmad03021]
    BAY61_02700
   03400 DNA repair and recombination proteins [BR:pmad03400]
    BAY61_02700
Enzymes [BR:pmad01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BAY61_02700
Transcription machinery [BR:pmad03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BAY61_02700
DNA repair and recombination proteins [BR:pmad03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BAY61_02700
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: ASR34075
UniProt: A0A222VJI4
Position
627785..631696
AA seq 1303 aa
MLDVNFFDELRIGLATADDIRQWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITGVNTELRHNDQPTLENEISVERKNVEAKRDADIEARAQKLEAD
LAELEGEGAKADVRRKVKEGGEREMRQLRDRAQRELDRLEEVWSTFTKLEPRQLIVDELL
YRELIDRYGEYFTGGMGAEAIQKLATEFDVGAEAESLRDTIRNGKGQKKLRALKRLKVVA
AFQATGNDPRGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKDMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PQVWDVLEEVINGHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSANNILSPASGRPLAMPRLDMVTGLFHLTRLDESAQGSGQ
AYSSVAEAIMAFDMKQVGLHAPVKIRVKDRQPPKAAEAGLREAGWEPGQPWLAETTLGRV
LFNELLPADYPFVNEPLPKKRQAVIVNDLAERYSMTQVAQTLDRLKDAGFFWATRSGVTV
AISDVLVPPEKKEILDQYEARASQVEKRYQRGQLSHIERNNELVKVWGQATEDVAKVMEE
HFPEDNPISMIVKSGAAGNMTQVRSLAGMRGLVSNPKGEYIPRPIKSNFREGLSVAEYFI
ATHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREVDCGTSRGINMIIGETLPDGRVI
RTQYVETSAYARTLATDAVDAQGNVVFNAADDLGDPAIETLISTGVTKIKVRSVLTCESA
QGVCATCYGRSMATGKLVDVGEAVGIVAAQSIGEPGTQLTMRTFHQGGVAGDDITTGLPR
VTELFEARVPKGKAPIADVDGRVRIEESERFWKITLIPDDGSEEIVFDKLSKRQRLAVGP
DGPLADGDHVNVGQLLLEGTPDPHEVLRVMGPREAQMHLVDEVQKVYRAQGVSIHDKHIE
VIVRQMLRRVTIIDSGATEFLPGELPERTRFEHINRQSVAEGGEPASGRPVLMGITKASL
TTDSWLSAASFQETTRVLTDAAINGRSDKLVGLKENVIIGKLIPAGTGINRYRNIQVQPT
EEARVAAYAIPSYDDGYYTPDVFGTGTGAAVPLDDYDFGRDFR
NT seq 3912 nt   +upstreamnt  +downstreamnt
gtgctggacgtcaatttcttcgacgagctccggatcgggctggccaccgccgacgacatc
cgtcagtggtccttcggtgaggtcaagaagccggagaccatcaactaccgcacgctcaag
ccggagaaggacgggctcttctgcgagaagatcttcggtcccacccgcgactgggagtgc
tactgcggtaagtacaagcgggtccgcttcaagggcatcatctgcgagcgctgcggtgtc
gaggtcacgagggcgaaggtccgccgtgagcggatgggccacatcgaactggccgccccc
gtcacccacatctggtacttcaagggtgttccgtcgcggctgggctacctgctcgacctg
gcgccgaaggatctcgaaaagatcatctacttcgccgcctacgtgatcaccggtgtgaac
accgagctgcggcacaacgatcagccgacgctggagaacgagatcagcgtcgagcgcaag
aacgtcgaggccaagcgcgacgccgacatcgaggcgagggcgcagaagctggaggccgac
ctcgccgagctggagggcgagggcgcgaaggccgacgtccgccgcaaggtcaaggagggc
ggcgagcgcgagatgcggcagctccgcgaccgcgctcagcgtgaactggaccgcctcgaa
gaggtgtggtccaccttcaccaaactcgaaccgcgccagctcatcgtcgacgagctgctc
taccgcgagctgatcgaccgctacggcgagtacttcaccggcggcatgggtgccgaggcc
atccagaagctggccaccgagttcgacgtcggcgccgaggcggagtcgctgcgcgacacc
atccgcaacggcaagggccagaagaagctgcgtgcgctcaagcggctcaaggtcgtcgcc
gccttccaggcgacgggcaacgacccgcgcggcatggttctcgacgccgtcccggtgatc
ccgccggagctgcgtcccatggtccagctcgacggtggccgcttcgccacctcggacctc
aacgacctgtaccgcagggtgatcaaccggaacaaccggctgaagcgactcatcgacctc
ggcgcacccgagatcatcgtcaacaacgagaagcggatgctgcaagaggccgtcgacgcg
ctgttcgacaacggccgccgcggccgtccggtcaccggaccgggcaaccgtccgctgaag
tcgctttccgacctgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgggtcgactactcgggccgttcggtcatcatcgtggggccgcagctcaagctgcaccag
tgcggcctgccgaaggacatggcgctcgaactgttcaagccgttcgtcatgaagcggctc
gtcgacctcaaccacgcgcagaacatcaagtccgcgaagcggatggtggagcgcgctcgt
ccgcaggtgtgggacgtgctggaagaggtcatcaacggccaccccgtgctgctcaacagg
gcgcccaccctgcacaggctgggtatccaggcgttcgagccgcaactggtcgaaggcaag
gccatccagctccacccgctggtgtgcgaggcgttcaacgccgacttcgacggtgaccag
atggcggtccaccttccgctgtcggctgaggcgcaggccgaggcccgcatcctgatgctg
tcggccaacaacatcctgtcgcctgcctccggtcgcccgctggccatgccgcggctggac
atggtcaccggcctgttccatctgaccaggctcgacgagagtgcacagggctccggccag
gcgtactcctcggtcgccgaggcgatcatggccttcgacatgaagcaggtcggcctgcac
gccccggtgaagatcagggtcaaggaccggcagccgccgaaggcagccgaagccggtctg
cgggaagcgggatgggaacccggccagccgtggctggccgagaccaccctcggcagggtc
ctcttcaacgaactgctgcctgccgactacccgttcgtcaacgagccgctgcccaagaag
cggcaggcggtcatcgtcaacgacctcgccgagcggtactcgatgacgcaggtcgcgcag
accctcgaccggctcaaggacgccggtttcttctgggcgacgcgctccggtgtcacggtg
gccatctccgacgtgctcgtcccgccggagaagaaggagatcctcgaccagtacgaggcg
agggcttcccaggtggagaagcgctaccagcgtggccagctctcccacatcgagcgcaac
aacgagctcgtcaaggtgtggggccaggcgaccgaagacgtcgcgaaggtcatggaggag
cacttccccgaggacaacccgatctcgatgatcgtgaagtccggcgcggcgggcaacatg
acccaggtcaggtcgcttgccggtatgcgtggtctggtgtccaacccgaagggtgagtac
atcccgcgcccgatcaagtcgaacttccgtgagggcctttcggtggcggagtacttcatc
gccacccacggtgcgaggaagggactcgccgacaccgctctgcgtaccgccgactcgggt
tacctgacccggcgtctggtggacgtgtcgcaggacgtcatcgttcgcgaggtcgactgc
ggcaccagccgcggcatcaacatgatcatcggcgagacgcttcccgacggcagggtcatc
aggacgcaatacgtcgagacctccgcctacgcgaggacgctggcgaccgacgccgtcgac
gctcagggcaacgtggtgttcaacgccgccgacgacctcggcgaccccgccatcgagacg
ctgatctcgaccggggtcaccaagatcaaggtgcgcagcgtgctcacctgcgaatcggcc
cagggtgtctgcgcgacctgctacggcaggtcgatggcgaccggcaagctcgtcgatgtc
ggcgaggctgtcggtatcgtcgccgcccagtccatcggtgagccgggtacccagctcacg
atgcgtaccttccaccagggtggtgtcgcaggtgacgacatcaccacgggtctgccccgt
gtcaccgagctgttcgaggcgagggtcccgaagggcaaggcgccgatcgccgacgtcgat
ggccgcgtgcgcatcgaggagagcgagcggttctggaagatcacgctgattcctgacgac
ggcagcgaggagatcgtcttcgacaagctgtcgaagcggcagcggctcgcggtgggccct
gacggcccgctcgccgacggcgaccacgtgaatgtcggccagctcctgctggaaggcacg
cccgacccgcacgaggtgctccgagtgatgggcccgcgcgaggcgcagatgcacctcgtc
gacgaggttcagaaggtgtaccgcgcgcagggtgtgtcgatccacgacaagcacatcgag
gtcatcgtgcggcagatgctgcggcgcgtcacgatcatcgactccggtgcgaccgagttc
ctgcctggcgaactgccggaacggacgaggttcgagcacatcaaccggcagtcggtcgcc
gagggtggcgagcccgcctccggccgtcccgtgctgatgggtatcacgaaggcgtcgctg
accacggattcgtggctgtcggccgcgtccttccaggagacgacgagggtgctgaccgac
gcggccatcaacggccgcagcgacaagctcgtcggcctcaaggaaaacgtgatcatcggt
aagttgatcccggccggtacgggcatcaacaggtaccgcaacatccaggttcagccgacc
gaggaggcgcgggtcgccgcatacgcgatcccgtcctacgacgacggttactacaccccg
gatgtgttcggtaccggcacaggtgccgcggtgccgctggacgactacgacttcggtcgc
gacttccggtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (27)   

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