KEGG   Paraphotobacterium marinum: CF386_12120
Entry
CF386_12120       CDS       T05093                                 
Name
(GenBank) ATP-dependent RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
pmai  Paraphotobacterium marinum
Pathway
pmai03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pmai00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CF386_12120
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pmai03019]
    CF386_12120
   03009 Ribosome biogenesis [BR:pmai03009]
    CF386_12120
Enzymes [BR:pmai01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     CF386_12120
Messenger RNA biogenesis [BR:pmai03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     CF386_12120
Ribosome biogenesis [BR:pmai03009]
 Prokaryotic type
  rRNA helicases
   CF386_12120
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 Flavi_DEAD HEM4
Other DBs
NCBI-ProteinID: ASK79781
UniProt: A0A220VHK0
Position
small:1063424..1065205
AA seq 593 aa
MSNSIERFDQLNLKSSILSSLEDINFINPTPIQAASIPPLLDGNDVLGKAQTGTGKTAAF
SLPILNKINFSQKKPQAIIMAPTRELAIQVAAEIKTLGQNIEKLFVTEIYGGASIVDQMK
VLKKNPQIVVGTPGRVKDLISRNKLHLDEVETFVLDEADEMLKMGFVDDVTWIMEQAPNS
AQRVLFSATMPPVVKDIVNKFLRKPVKIDVAGENKTVSKVDQKFWVVKGVDKDEALSRLL
ETENPDASIIFVRTKQDTEKLSDHLTRKGFKVSALHGDIPQSLRERTVEHIKKGVIDILV
ATDVVARGLDVPRISHVFNYDIPFDVESYIHRIGRTGRAGRSGKAILFVRTNQLKMLRTI
ERVTKSKMSEISLPLRDDVAKARLNKLATDIEQEKEFKYLDKFIALKDQLKEKIQISDDE
LCAILLRKVQGTRPLFYQGPDPMIAALERDQKRNERRKKGEKTKSGDGFKGDWDTYQLQV
GREHGVQVKDIVGALANELDLSKDLIGGIKLTPRHTLVQLPKNLQDATVTHLKKLKIRQN
KVNAVVVYDDTMNENRKSRRNSGHRGRSRNEQGSRPERKFDRNRASKNRVKNK
NT seq 1782 nt   +upstreamnt  +downstreamnt
atgtcaaacagtatagaacgattcgatcaattaaacttgaagagctcaattttgagttct
ttagaagacatcaattttataaatccaacaccaatccaagctgcatcgatcccccctctt
ttagatggtaatgatgttctcggtaaagctcaaaccggtacaggaaaaacagccgccttt
tcgctacctattttaaataaaataaacttttcacaaaaaaaaccacaagcaattatcatg
gcacctactagagagttagctattcaagttgccgcagaaatcaaaacgttaggtcaaaat
attgaaaaattgtttgtaacggaaatctatggaggagcttcaattgttgatcaaatgaag
gttctgaaaaaaaatcctcaaattgttgttggaactccaggtagagtaaaggatttgatt
tcacgtaataaacttcacttggatgaagtagagacttttgtattagatgaagcggacgaa
atgctaaaaatgggttttgtggatgatgtgacttggattatggagcaagcacctaactca
gcacaacgagttttattttcagcgacaatgcctccagtggtaaaagacattgttaataaa
tttttaagaaaaccggttaagattgatgttgctggtgaaaataaaacagtatctaaggta
gaccaaaagttttgggttgtgaaaggtgttgataaggatgaagctctttcaaggcttctt
gaaactgaaaatcctgatgcgtctatcatttttgtgagaacaaagcaagatacggaaaaa
ctatctgatcacctaactagaaagggctttaaggtttccgctcttcatggagatattcct
caatctttaagagaacgaactgtagagcatatcaagaaaggtgttattgatatattagtg
gcgactgatgtggtagcacgtggacttgatgtgccgagaataagccatgtttttaattat
gatataccttttgatgttgaatcttatattcatcgaatcgggagaacaggaagagcaggg
cgttcaggaaaagcaattctttttgttagaaccaatcaattaaaaatgctaagaactatt
gaaagagtaaccaaatcaaaaatgagtgaaatctcacttcctcttagagatgacgttgct
aaagctagattaaacaaacttgctactgatattgaacaagaaaaagagtttaaatattta
gataaatttatagcattaaaagatcaacttaaagagaagattcaaattagtgatgatgaa
ttatgcgcaattttattgagaaaggttcaaggcaccagaccacttttttatcaagggcct
gatcctatgattgctgctcttgaaagagatcaaaagagaaatgaaagaaggaaaaaaggt
gagaaaacaaaaagtggagatggatttaagggagattgggatacttatcagttgcaagta
ggaagagaacatggtgttcaggttaaggatattgtgggagctcttgcaaatgagcttgat
ttatcaaaggatttaattgggggtattaaacttacaccacgtcatactttagttcaactg
ccaaagaatttacaagatgcgacagtaactcatttgaaaaagttaaaaattagacaaaac
aaggtcaatgctgttgtagtttatgatgatacaatgaatgaaaatagaaaaagtagacga
aattcagggcacagaggtcgttcaagaaatgaacaaggcagtagaccagaaagaaagttc
gatagaaatcgagcttctaaaaatcgggtaaaaaataaataa

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