KEGG   Parus major (Great Tit): 107201864
Entry
107201864         CDS       T04864                                 
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6
  KO
K08737  DNA mismatch repair protein MSH6
Organism
pmaj  Parus major (Great Tit)
Pathway
pmaj03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pmaj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    107201864 (MSH6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pmaj03400]
    107201864 (MSH6)
DNA repair and recombination proteins [BR:pmaj03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     107201864 (MSH6)
SSDB
Motif
Pfam: MutS_V MutS_III MutS_I PWWP MutS_IV MutS_II MUM1-like_PWWP
Other DBs
NCBI-GeneID: 107201864
NCBI-ProteinID: XP_015477275
Ensembl: ENSPMJG00000004361
Position
3:complement(14464871..14479601)
AA seq 1348 aa
MSRQSTLLRFFSKATPPPPAGTEPRSEPRRCASAERNGLQAAGSPPGGAGRAAARRGENG
EKGAGGGAAAKAPSVSCEYSPGDLVWAKMEGYPWWPCLIYNHPTERTIVRGKGKSTRIHV
QFFDDCPTRGWISVKYLKPYKGSSDGETMKGGMFYSTKPEIKRAMVLADDAMSKDKTKRL
ELAVCNEPSDTEEEEEEMEEMSENASGNSEDCNSEEDVKSNKRAMSRERAIKAKRRRVLD
SDSDHDGSDVEFKPDGKEAASSEEASSGVDENESSDTETESVAESPVKVPSKRKRKEVKK
PAKRRSLGNECSETPKRTATVSSEAKSKLTSFAAPESFESQASACSGGTVGFSVWEHEKL
DWLQEGKRKDVHRRRQGDPDYDPCTLYVPEDYLNKCTPGVRRWWQLKSQNFDAVICYKVG
KFYELYHMDAVTGVNELGLVYMRGTWAHSGFPETAFGRFSDVLVQKGYKVVRVEQTETPE
MMEARCKSTGHSSRFDKVVRREICRIITKGTQTYSVMDCDPSENHSKFLLCVKEKEDSAG
TRVYGVCFVDTSVGKFYVGQFPDDRHCSRFRTLIAHYTPVQVLFEKGNLSVDTQKILKGS
LVSCVQEGLTSGSQFWNASKTLKVLLEEGYFKEKQNSENGCSLPSVIKSLTSESDSLGLT
PGENSELALSALGGCVFYLKKCLIDQELLSQANFEEYVPVDIAAAKNMSSSSLFARTGQR
MVLDGVTLMNLEVLQNGTNGTTEGTLLERIDSCCTPFGKRLLKQWLCAPLCNPKSINDRL
DAVEDLLAVPDKMSEVSEHLKKLPDLERLLSKIHSIGSPLKSQNHPDSRAIFYEELKHSK
KKIADFLSALEGFKVINEIVDLMEEAASDFKSRVLKQLVTRKAKNPDGRFPDLSAELTRW
DTAFDHNQARKTGVITPKAGFDPDYDGALQDIKTVEEDLRKYLDKQRKLLGFKSVQYWGT
GKNRYQMEIPESAVSRNLPEEYELRSSRKGYKRYWTKEIEKMLAAMVNAEERRDAALKDC
MRRLFYNFDKNSKDWQTAVECIAVLDVLMSLAHYSQGGDGPLCRPVILLPMDNAPPFLEL
RNSRHPCITKTFFGDDFIPNDIVIGIKDEGSSSEASCVLVTGPNMGGKSTLMRQAGLLVV
MAQLGCYVPAETCRLTPIDRVFTRLGASDRIMAGESTFFVELSETSSILQHATEHSLVLV
DELGRGTATFDGTAIASAVVQELAERIRCRTLFSTHYHSLVEDYSHRGAVRLGHMACMVE
NESEDPSQETITFLYKFIEGACPKSYGFNAARLADIPEEVIQKGHRKAKEFEKTTISLRI
FRYLCQVVDGTNTDANALQKLMAMISRL
NT seq 4047 nt   +upstreamnt  +downstreamnt
atgtctcgccagagcaccctgctccgcttcttctccaaggccaccccgccgccgccggcc
ggcaccgagccccgcagtgagccccgccgctgcgcctcggcggagcggaatggcctccag
gccgccggcagccccccgggcggggcgggccgagcggcggcgcggcgcggcgagaacggc
gagaagggcgcggggggcggcgcggccgccaaggcccccagtgtctcctgtgagtattct
ccgggggacttggtgtgggccaagatggaaggttatccctggtggccgtgcctcatatac
aaccaccccactgaaaggacaatagtcagaggaaaaggaaaatccactcgtatccatgtg
cagttctttgatgactgccccacaaggggttggatcagtgttaaatacctgaagccatat
aaaggttcatcagatggagaaactatgaagggaggtatgttttacagcacaaagcctgaa
attaaaagagccatggtgctggcagatgatgccatgagcaaagataaaaccaagaggctt
gaactggcagtatgcaatgaaccttcagacacagaggaagaagaggaagaaatggaggag
atgagtgaaaatgcatcaggcaacagtgaagactgcaacagtgaggaggatgtgaaaagc
aataagcgagcgatgagcagggaaagagctataaaagccaagaggaggagagtgttggat
tctgacagtgaccacgatggctctgatgtggagttcaagcctgatgggaaagaagcagca
agcagtgaggaagccagtagtggggtggatgaaaatgagtcttctgacacagagacagag
agtgttgcagagagccctgtaaaagtcccttctaaacgaaagagaaaagaggtgaaaaag
cctgctaaaaggcgtagcttgggaaatgaatgttctgaaacgcccaaaagaacagcaaca
gtctcctcagaagccaagtctaagctgacatcgtttgcagcacctgaaagttttgaatct
caagcaagtgcttgcagtggaggcactgttggcttctcagtgtgggaacacgaaaagctt
gactggctgcaagaagggaagaggaaagatgtgcacaggaggcgtcagggtgaccctgat
tacgacccctgtactctctacgtgcctgaggattatctcaacaagtgcacgccgggcgtg
cggaggtggtggcagctcaaaagccaaaactttgatgctgtgatttgctacaaggttgga
aagttctatgagttgtatcacatggacgcagtcactggtgtcaatgagttgggcctggtc
tatatgaggggcacctgggcccactcaggttttccagaaactgcctttggccgattctcc
gatgtcctggtgcagaagggctacaaggtggtgcgcgtggagcagacggaaacgcctgaa
atgatggaagcgcgctgcaagtcaacgggccactcctccaggtttgacaaggtggtgcgc
cgggagatctgcaggatcatcaccaagggaacccagacctacagcgtcatggactgcgac
ccctccgagaaccacagcaagttcctgctgtgcgtgaaggagaaggaggactcggccggg
acgcgcgtgtacggggtttgcttcgtcgacacctccgtggggaagttctacgttggccag
ttcccagacgaccgccactgctccaggtttaggactttgatagctcattacacccctgtg
caggtgctgtttgagaaggggaacctctctgtggacacacagaagatactgaagggctcg
cttgtttcttgcgttcaggaagggctgacctcgggttcccagttctggaatgcttctaaa
acactaaaggtccttcttgaggaagggtatttcaaggagaagcagaattctgaaaatgga
tgttctctgccctccgtaatcaaatctctgacttcagagagtgactctctgggattaact
cctggtgaaaacagtgagttagctttgtcagctcttgggggatgtgtcttctatctcaaa
aaatgtctgattgatcaggagctgttatcacaggcaaacttcgaggaatatgtccctgtg
gatattgctgctgcaaaaaacatgagttcaagtagtttgtttgccagaactggccagcgg
atggtgctggatggagttaccctgatgaacctggaagtcctgcagaatggaaccaatgga
accacagaaggtactttgttggaaaggattgattcttgttgtacaccattcgggaagcga
ctgctgaaacagtggctctgcgctccgctttgtaatcctaaatccatcaatgatcgcttg
gatgctgtcgaggacctcctggcagtgccagataaaatgtctgaagtcagtgagcacctc
aagaaactgcctgaccttgagagactgctcagcaaaattcacagcatcgggtcaccactc
aaaagtcagaaccatcctgacagcagggccatcttctatgaagaactcaaacacagcaaa
aaaaaaatcgctgactttctgtctgccctggagggattcaaagtaattaatgaaattgtt
gatctcatggaggaggctgccagcgacttcaaatccagagtcctgaagcagctggtcacc
cgcaaagccaaaaatcccgacggccgcttccccgacctgagtgcagagctcaccaggtgg
gacactgcctttgatcacaaccaggctcggaagacaggagtgattaccccaaaggcaggt
tttgaccccgattatgacggagcactacaggatatcaaaactgtcgaggaagatcttcgc
aagtacctggataagcagcgcaagctgctcgggttcaaatccgtgcagtactgggggaca
ggcaagaaccggtaccagatggaaatcccggaaagtgccgtgtctcgtaacctgcccgag
gaatacgagctgaggtcgagcaggaagggctacaagcgctactggaccaaggagatcgag
aagatgctggctgcgatggtgaacgccgaggagcgccgcgacgccgccctcaaggactgc
atgaggcgcctcttctacaacttcgacaagaacagcaaggactggcagacagctgtggag
tgcattgctgtgctggatgtcttgatgtcccttgctcactacagtcaaggtggtgatgga
cccctgtgccgacctgtaatcctgctgcctatggataatgctcctcccttcctggaactt
cgaaattcccgccatccgtgcatcacaaaaactttctttggggatgattttattcccaat
gacattgtaattggcatcaaggatgagggcagcagcagtgaggcttcctgtgtgttggta
actggcccaaacatgggtggcaaatccacgctcatgagacaggctggtctcctggtggtc
atggcccagctggggtgctacgtgcccgcggaaacctgcaggctcacgcccatcgaccgc
gtgttcacacggctcggcgcctccgacaggatcatggctggtgaaagtaccttctttgtt
gaattgagcgagacttccagcattctgcagcatgcaacagagcattcccttgttctcgtc
gatgaactgggcagaggcacggccacgtttgacggaacagccatagcgagcgcggtggtg
caggagctggcggagaggatccggtgccggacgctcttctccactcactaccactccctg
gttgaggactattcccaccgcggggccgtgcgcctgggccacatggcatgcatggttgaa
aatgagagtgaagacccaagccaggaaacaattacgttcctgtacaagttcattgaagga
gcctgcccaaagagctatggcttcaacgcggcaagacttgcagatattccagaggaagtc
attcagaaggggcatagaaaagctaaagagtttgaaaaaacaaccatctcactgagaata
tttaggtacctgtgccaggtggtggatggaacgaacactgatgcaaacgcccttcagaaa
ctcatggcgatgatcagccggctttag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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