KEGG   Parus major (Great Tit): 107203489
Entry
107203489         CDS       T04864                                 
Symbol
POLR1A
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
  KO
K02999  DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Organism
pmaj  Parus major (Great Tit)
Pathway
pmaj03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pmaj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    107203489 (POLR1A)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pmaj03021]
    107203489 (POLR1A)
Enzymes [BR:pmaj01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     107203489 (POLR1A)
Transcription machinery [BR:pmaj03021]
 Eukaryotic type
  RNA polymerase I system
   RNA polymerase I
    Core subunits
     107203489 (POLR1A)
SSDB
Motif
Pfam: RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_4 HMG_box BUD22
Other DBs
NCBI-GeneID: 107203489
NCBI-ProteinID: XP_015481163
Ensembl: ENSPMJG00000016785
Position
4:complement(63162035..63191450)
AA seq 1707 aa
MRPPKVVPWRRLVGVSFGMYTADEIRKLSVKSITNPQYLDNVGNPAVSGLYDLALGPPDS
KEVCATCMQNFSNCPGHFGHIELPLTVYNPLFFDKLYLLIRGSCLNCHMLTCPRAVVHLL
LSQLKVLEKGLLHAVHDLEIILNRFIEQCADATGSEIEEELNHHVQEMLQSSQIRDRCSN
VKNVCECRNKLISQFWKSHMGSKKCPNCKSRRSLVRKEHNSKLTVTYPSTMCHKSGEEGI
LDETAGIDESQLGKRGYLTPMTAKEYILALWKNEGFFLRYLFPGMDPHESSGFSPDLFFL
DLLVVPPSRYRPVNRVGDRLFTNGQTVNLQAVIKDAQLIRKLLVFMAKEQCQPIKITEEI
QTAIGGDSEPLDHSVLTTIPGQSIADKLYNTWIRLQSHVNIVFDSDMDKLITEKYPGIRQ
LLEKKEGLFRKHMMGKRVDFAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKE
LRQAVINGPKVHPGASMVINEDGSRTVLSATSLTQREAIAKQLLTPSSGAPQTGLKIVCR
HIKNGDVLLLNRQPTLHRPSIQAHRARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQ
SELGRAEAYTLAFTDEQYLVPKDGKPLPGLIQDHMISGVSMTIRGCFFTREQYMELVYRG
LTDKKGRIKTFPPAIMKPQRLWTGKQVVSTLLINIIPDNCAPLNLTGKAKIGGRAWVKGP
ARGCLNLDSMCESQVVIRDGELLCGVLDKAHFGSSAYGLVHCCYEIYGGEVSGKVLTCLG
RLFTAYLQLYRGFTMGIEDILVKPEADRKRKKIIERSRQSGIEAVRAALNLPEAASCEEV
QGKWQDAHLCKDQRDFNMVDMKFKEEVNSYNNEVNKVCMPLGLHRSFPENNLQLMVQSGA
KGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIRPS
EFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGED
GLDIPKTQFLQPEQFPFIAENYEVIQKTNHLDEALARMECHQANQQFKAIKKWRARHQNS
VQRKGGFLLFSQKKLASLKAQLPGGEIKNGRDPATLQLLKMWYELDEKKRRKYLKKTDKC
PDPSLGVWRPDTYFASVSETFENGVEGYINKWQSESSWSYMHPALSSDRLKNLLYLKWQR
SLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTP
MMSVPVLNTKKAFKKMKHLKKQLTRVCLAEVLQRVDIEESLHVKNKLNKHRLYKIKFQFL
PHEYYREEKCVKPRQILHFIETRFFKVLLEAIKKKTTKMASFNEVSTRKTTRKDLDDEQD
KTQNNLEAVAEEEENIVDAEVDEGDGDATEKKRRKNQEEEVDYESEEENEEENVNENAED
EEAESGKEETDGAEEDQSRAEGEDSQHLSFVSQTKKGKDGLLQSAEVRVNAVVESHPSIQ
DYTFDTENELWCEVSLALPLTKVYFDLSSLLASLARSTVIHEVKGITRCLLNESTSKEGE
KEFVLQTEGINLTELFKYSDILDLNRLYCNDIHAMAKNYGIESALRVIIKEIKDVFAVYG
IVVDPRHLSLVADYMCFEGIYKPLNRIGIQSNSSPLQQMTFETSYKFLKEATMMGAHDEL
RSPSACLVVGKVVKGGTGLFDLKQPLT
NT seq 5124 nt   +upstreamnt  +downstreamnt
atgaggccgcccaaagtggtgccgtggcggcggctggttggggtgtccttcgggatgtac
acggccgacgagatcaggaaactgagtgtgaagtccataacaaaccctcagtacctggat
aatgtggggaatccggctgtaagtggactctacgacttggccttgggacctccggactcc
aaagaagtgtgtgcgacttgcatgcagaacttcagcaactgccccggacactttggccat
atagaactgcctctgactgtctacaaccccctgttctttgataaattataccttctcatc
cgaggatcttgtttgaattgccacatgctgacatgtcctcgagccgtggttcacttactg
ctaagtcagctgaaggtgctggagaaagggttgcttcatgctgtccatgaccttgaaatc
attctgaacaggtttatagagcaatgtgcagatgcaacaggctcagaaattgaggaagag
ttgaatcaccacgttcaggaaatgttacaaagctctcaaataagagatcggtgttcaaat
gtcaaaaatgtatgtgagtgtagaaataaactgatatcacagttctggaaatcacatatg
ggttcaaagaaatgcccaaactgcaaatccaggagatcactggtgcggaaggagcacaac
agcaagctgacagtgacctatccttctacaatgtgccataagtcaggagaggaaggcatt
ctggatgaaacagcaggtattgatgaaagccagttagggaagagaggctacctgacacca
atgactgccaaagagtacatcctggctctgtggaagaatgaaggtttctttctgcgttat
ctcttccctgggatggatccccatgagagttcaggattcagtccagacttgtttttttta
gatcttcttgtggttccaccttcaaggtatcgtcctgtaaatcgtgttggagatcgcctg
ttcacaaatgggcagactgtgaacttgcaggctgtgataaaagatgcccaactgatacgg
aagctcttggttttcatggccaaagaacagtgtcagccaataaaaattacagaagaaatt
caaacagcgataggaggggatagtgaacctctggaccattctgtgctgacaacgattcca
ggacagagcattgcagataagctgtacaatacttggatacgtctccagagccatgtcaac
attgtgtttgatagtgacatggacaagctgataacagaaaaataccctggtattcgtcag
ctattggagaagaaggaagggctgttccgcaagcacatgatggggaagcgtgtggatttt
gctgctcgatctgtcatttgccctgacatgtacattgggaccaacgagattggcatcccc
atggtatttgccaccaaactgacttatcctcagccagtcactccctggaatgtcaaagag
ctgaggcaggctgtcatcaatggccccaaggtgcaccctggggcctccatggtcattaac
gaggacgggtctcgcacggtgctgagcgccaccagcctgacccagcgcgaggccatcgcc
aagcagctcctcaccccctcctcaggggcaccccagacagggctgaagattgtgtgtcgg
cacattaagaacggggatgtgctgctgctgaaccgccagcccacacttcacagaccttcc
atccaagctcaccgcgcccgaatcctgcccggggagaaggtgctgaggcttcactacgcc
aactgcaaggcttacaacgctgacttcgatggggatgaaatgaacgcccatttcccacag
agcgagctgggcagagcagaagcctacaccttagccttcactgatgagcagtacctggtg
ccaaaggatgggaagccacttcctggcctgatccaggatcacatgatttctggagtcagc
atgacaatccggggctgctttttcaccagagaacagtacatggagctcgtgtaccgaggg
ctgacagacaaaaaaggaagaattaaaacatttcctcctgccattatgaagccacagcga
ttatggacaggaaagcaggttgtttccactttgttaataaacatcattccagacaattgt
gctccactgaatttgactgggaaagcaaaaattggtgggagagcctgggtaaagggacct
gcaagaggatgtctgaatcttgattcaatgtgtgaatctcaggttgttatcagagatggg
gaattactgtgtggagtcttggacaaagctcactttggcagctctgcctatgggcttgtc
cactgctgttatgagatctatgggggtgaagtcagtgggaaagtgctgacgtgtctgggg
cgcctcttcactgcttacctgcagctgtacagggggtttaccatggggattgaagatatt
ttggttaaacctgaagcagaccgcaaaagaaaaaaaatcattgaaaggtcaagacagagt
ggtattgaagctgtcagagctgctcttaatttgccagaagcagcatcgtgtgaggaggtc
caagggaagtggcaggatgcccatctctgcaaagaccagagggatttcaacatggttgat
atgaaattcaaggaggaagtaaacagttacaacaatgaagtcaacaaggtttgcatgccc
cttggtctccacaggagctttccagagaacaatttgcagttgatggtacagtcaggagcc
aaaggatccactgtgaacacaatgcagatttcttgtttgctgggccagattgagctggaa
ggccgaagacccccactgatggcatctggcaaatccctgccatgtttccagccttatgac
ttttcccctagctcaggaggatttgtgactggcagatttctcactgggatcagaccttct
gaattcttctttcactgcatggctggcagggaaggtcttgtggatacagctgtcaaaacc
agccggtctgggtacctgcaaaggtgtatcataaaacatttggaaggactggtagttcag
tatgacctgactgtgcgagacagtgatggcagcgtggtgcagtttctgtatggtgaagat
gggcttgacatccctaaaactcagttcttacaacctgagcagtttcctttcattgcagaa
aactacgaggtaatccagaagacaaaccatctggatgaagctctagcaaggatggagtgt
caccaagctaaccagcagttcaaagccatcaaaaagtggcgagccagacaccaaaactct
gtgcaaagaaaaggaggctttctgttgttttcccaaaagaaattggcaagtttgaaagca
cagcttccaggaggtgaaataaagaatggaagagatcctgctacattacagttgttgaag
atgtggtatgagcttgatgaaaagaaacgaaggaagtatctgaagaagacagataagtgt
cctgaccccagccttggggtttggcgtccagatacttattttgcatctgtttcagaaaca
tttgaaaatggagttgaaggctatatcaataaatggcaatctgagagcagctggagttac
atgcacccagcactttcttctgatagattaaagaatctgttgtatttaaagtggcagcgt
tctctttgtgacccaggagaagctgtggggcttcttgctgctcagagtattggggaacct
tcaacacagatgactctgaacacctttcactttgctggcagaggtgaaatgaatgtcaca
ttgggtattccaaggttgcgggaaatactgatggtggccagctcaaacattaaaacacca
atgatgagtgttcctgtgctcaacaccaagaaagctttcaagaagatgaaacatcttaag
aaacagctcacaagagtgtgcttagctgaggtcttgcagagagtggacatcgaggaatcc
ctgcatgtgaaaaacaagctgaacaagcatcgcctctacaaaatcaaattccaattcttg
ccccatgaatattatcgagaggagaagtgtgtgaagcccaggcagatcttacacttcatt
gaaacaaggttctttaaagttcttctggaagcaattaaaaagaagactacaaagatggca
tcttttaatgaagtcagcactcggaagacaactcggaaggatttagatgatgaacaagac
aagacacagaataatctggaagctgtagcagaggaagaagagaacattgttgatgcagaa
gttgatgaaggagatggtgatgctacagaaaaaaagcggaggaagaaccaggaggaagag
gttgattatgagagcgaagaggagaacgaggaagaaaacgttaatgagaatgcagaagat
gaagaggctgaatctggaaaagaagagactgatggtgctgaagaggatcagagcagagca
gagggtgaagattctcagcatctttcctttgtgtctcagactaaaaaagggaaagatgga
ttgcttcagtcagcagaggtgcgagtgaacgctgttgtggagagccacccatccatacag
gattacacgtttgacactgaaaatgagctttggtgtgaggtttctttggcattgccactg
accaaggtgtactttgacctctcgtccctgctggcgtccctggcgcgcagcacggtgatc
cacgaggtgaagggcatcacgcgctgcctgctgaatgaaagtaccagcaaggagggagag
aaagaattcgttctccagacagaagggataaacctcacagagctcttcaaatactctgat
attttggacctgaatagactttattgcaatgatatccatgccatggctaaaaattatgga
attgaatcagccctgagggtgattataaaggaaataaaagatgtatttgctgtatatgga
attgtggtagaccctcgacacctttcacttgtggcagattacatgtgttttgaaggaatt
tataaaccactgaatcgcattggaattcagtccaactcctcccctctgcaacagatgaca
tttgaaaccagctacaaattcttgaaggaagcaacgatgatgggtgcccacgatgagctg
cgatccccttcggcctgcctggtggttggaaaagttgtcaaaggagggactggcttgttt
gacctcaagcagcccctgacatag

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