KEGG   Parus major (Great Tit): 107206089
Entry
107206089         CDS       T04864                                 
Symbol
GTF2H1
Name
(RefSeq) general transcription factor IIH subunit 1 isoform X1
  KO
K03141  transcription initiation factor TFIIH subunit 1
Organism
pmaj  Parus major (Great Tit)
Pathway
pmaj03022  Basal transcription factors
pmaj03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pmaj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    107206089 (GTF2H1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    107206089 (GTF2H1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pmaj03021]
    107206089 (GTF2H1)
   03400 DNA repair and recombination proteins [BR:pmaj03400]
    107206089 (GTF2H1)
Transcription machinery [BR:pmaj03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     107206089 (GTF2H1)
DNA repair and recombination proteins [BR:pmaj03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     107206089 (GTF2H1)
SSDB
Motif
Pfam: PH_TFIIH BSD
Other DBs
NCBI-GeneID: 107206089
NCBI-ProteinID: XP_015487018
Ensembl: ENSPMJG00000008670
Position
5:13767600..13791355
AA seq 685 aa
MPIGGRPVWPLRTVYPPRRAQDKRQCCHLSIPLTDPCHPSGCCSARSRTWQRLCAAAGQT
GPLAQIFHDSAVACGERKPSSSSKACIDLSELACQPVPTLAKSGLIKTCKRFLYFCSEFD
KTIVGRDWSEMLLIVATMATSSEEVLLIVKKVRQKKQDGALYLMAERIAWAPEGKDRFTV
SHMYADIKCQKISPEGKAKIQLQLVLHAGDTTNFHFSNESTAVKERDAVKDLLQQLLPKF
KRKANKELEEKNRMLQEDPVLFQLYKDLVVSQVISAEEFWANRLSLNAGDNSAAPHKQDV
GISAAFLADVRPQTDGCNGLRYNLTSDIIESIFRTYPAVKMKYAENVPHNMTEREFWTRF
FQSHYFHRDRLNTGSKDLFAECAKLDEKGLKAMVSQGVKNPLIDLTALEDKTLDEGYGVA
SVASTSNASKSARESSNAAIIKRFNHHSAMVLAAGLRKQEAQNDHYSETSSTDGNSRDSD
FFQPPLKKVKLQEAIEYEDLSKNNSVKTIALNLKKSDRYYHGPTPIQSQQYATSQDIINS
FNSIRQEMEAYVPKLTQVLSSGDAASTIAVLSPGGALMQGGTQQAINQMVPNDIQSELKH
LYVAVGELLRHFWSCFPVNTPFLEEKVVKMRSNLERFQVTKLCPFQEKIRRQYLSTNLVS
HIEEMLQTAYNKFHTWQSRRMLKKT
NT seq 2058 nt   +upstreamnt  +downstreamnt
atgccgatcgggggaaggccggtctggccgctcaggaccgtgtatcccccccgccgtgcc
caggacaagcggcagtgctgccacctctccatcccgctgacagatccctgccacccctcg
gggtgctgctctgcccgctcccggacctggcagcgtctctgtgccgctgcgggtcagacc
gggccattggcacagatattccatgattctgctgttgcctgcggggagcggaagcctagc
agcagcagcaaggcctgcattgatctgtcagagcttgcctgccagcccgtgcccaccctg
gccaagtcaggattaattaaaacgtgcaaacgtttcctttatttctgctcagaattcgac
aaaaccattgtgggaagagactggagtgaaatgctgctcattgtagccacaatggcaaca
tcatctgaagaagtgttgctgatagtgaagaaggtgcgtcagaagaagcaggatggggcc
ctgtacctgatggctgaacgcattgcgtgggcacctgagggcaaggaccgcttcaccgtc
agccacatgtatgcagacatcaaatgccagaaaatcagtccagaaggtaaagctaaaatt
cagctgcagctggtattgcatgcaggggacacaaccaacttccacttctccaatgaaagc
acagcagtgaaagagcgagatgcggtcaaggatcttcttcaacaactgttgcccaagttc
aaaaggaaagctaataaagaacttgaggagaagaacagaatgctgcaagaagatcctgtt
ttgtttcagctctataaagaccttgttgtgagccaagtaatcagtgctgaagaattctgg
gccaaccgtttaagcctgaatgcaggggataattctgcagcacctcataagcaggatgtg
ggcatctctgcagcattcctggctgatgtacggcctcagacagatggctgcaacgggctg
aggtacaacttgacttcagatattattgaatctatatttcggacataccctgcagtgaaa
atgaaatatgcagaaaatgttccacataacatgaccgagagggaattctggacacggttt
tttcagtctcattattttcatcgggacaggctcaatacaggatcaaaagacctctttgca
gaatgtgccaaactggatgagaaaggcttaaaagcaatggtgtctcaaggagtgaaaaac
cctctaatagatttaacagctttggaagataaaacattagatgaaggctatggtgttgct
tctgtggcctctacatcaaatgcctcaaagtccgctagagaaagtagcaatgctgccatc
ataaaacgctttaatcatcatagtgccatggtccttgcagctggcctcaggaaacaagaa
gcacaaaatgaccattacagtgagaccagcagtacggatggaaactccagggattcagat
ttctttcagccaccactgaaaaaggtaaaactgcaggaggccattgaatacgaagattta
tcaaagaataatagcgttaaaactattgcactaaacttaaagaaatctgataggtattac
catggtccaactccaattcaatcacagcaatatgcaaccagtcaggatataattaattca
tttaatagtattagacaagaaatggaagcatatgtacccaaactaactcaggttctttca
agtggtgatgctgccagcactattgcagtcctgtcacctggaggagcacttatgcagggt
ggaacacagcaagccataaaccagatggtgccaaatgacattcagtctgaactgaaacac
ttgtatgtggcagtaggggaactgctacgacacttctggtcctgcttccctgttaacaca
ccattcctagaagaaaaggttgtgaaaatgaggagcaacttggaaagatttcaggttaca
aagctctgcccattccaagaaaagattcggagacaatatttaagcacaaatttggtaagt
catatagaagagatgctgcagacagcctacaataagttccacacgtggcagtcccggcgc
atgctgaagaagacgtga

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