KEGG   Prochlorococcus marinus NATL1A: NATL1_18861
Entry
NATL1_18861       CDS       T00467                                 
Symbol
rpoB
Name
(GenBank) RNA polymerase beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
pme  Prochlorococcus marinus NATL1A
Pathway
pme03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pme00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    NATL1_18861 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pme03021]
    NATL1_18861 (rpoB)
   03400 DNA repair and recombination proteins [BR:pme03400]
    NATL1_18861 (rpoB)
Enzymes [BR:pme01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     NATL1_18861 (rpoB)
Transcription machinery [BR:pme03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     NATL1_18861 (rpoB)
DNA repair and recombination proteins [BR:pme03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      NATL1_18861 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: ABM76442
CyanoBase: NATL1_18861
UniProt: A2C4N2
Position
complement(1546401..1549688)
AA seq 1095 aa
MSRSAIQVAKAATYLPDLVEVQRSSFKWFLDKGLIEELDNFSPITDYTGKLELHFIGAEY
KLKRPRHDVEEAKRRDATFASQMYVTCRLVNKETGEIKEQEVFIGELPLMTERGTFIING
AERVIVNQIVRSPGVYFKDEQDKNGRRTYNASVIPNRGAWLKFETDKNDLLHVRVDKTRK
INAHVLMRAMGLSDNDVIDKLRHPEFYKKSIDAANEEGISSEDQALLELYKKLRPGEPPS
VSGGQQLLQTRFFDPKRYDLGRVGRYKINKKLRLTIPDNLRTLTNEDVLSTLDYLINLEL
DVGGATLDDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIKERMTVGETDSLTPAQLVNP
KPLVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRISALGPGGLTRERAGFAVRDIHPSHY
GRLCPIETPEGPNAGLINSLATHARVNEYGFIETPFWKVENGRLIKEGDPIYLSADLEDE
CRVAPGDVATNEEGKIMAELVPVRYRQDFETVSPEQVDYVQLSPVQVISVAASLIPFLEH
DDANRALMGSNMQRQAVPLLRPERPLVGTGLETQVARDSGMVPISKVNGTVSYVDANAIV
VTDDEGNDHTHYLQKYQRSNQDTCLNHRPIVFNGDPVIVGQVLADGSACEGGEIALGQNV
LIAYMPWEGYNYEDAILVSERLVKDDLYTSVHIEKYEIEARQTKLGPEEITREIPNVSEE
NLGNLDEMGIIRIGAYVESGDILVGKVTPKGESDQPPEEKLLRAIFGEKARDVRDNSLRV
PSTERGRVVDVRIYTREQGDELPPGANMVVRVYVAQRRKIQVGDKMAGRHGNKGIISRIL
PREDMPYLPDGTPVDICLNPLGVPSRMNVGQVFELLMGWAASNLDCRVKIVPFDEMYGPE
MSNQTVQAYLKEAAKQPGKSWVYNPKDPGKLLLKDGRTGEPFDQPVAVGYAHFLKLVHLV
DDKIHARSTGPYSLVTQQPLGGKAQQGGQRLGEMEVWALEAYGAAYTLQELLTVKSDDMQ
GRNEALNSIVKGKPIPRPGTPESFKVLMRELQSLGLDIGVYTDDGKEVDLMQDVNPRRST
PSRPTYESLGKEYEE
NT seq 3288 nt   +upstreamnt  +downstreamnt
atgagcagaagcgcgattcaggtagccaaagcagctacatatctgcctgatctggttgag
gtgcaaagatcaagttttaagtggtttttggataaaggcttaatagaagaattagacaat
ttttctcccattactgactatacaggtaagcttgagctgcattttattggagcagaatat
aagcttaagcgtcctaggcatgatgtagaagaagcaaaaagaagagatgcaacgtttgct
tctcaaatgtatgtcacttgtcgcttagttaataaagaaaccggagagattaaagaacaa
gaagtttttataggtgaactacctttaatgactgaacgtggaacttttataattaatggt
gctgagagagtaatagtcaatcaaatcgttcgaagtccaggagtttatttcaaagatgag
caagataaaaatggtaggagaacttacaatgcaagcgttattcctaatcgcggagcatgg
ttaaagtttgaaactgataaaaacgatttgctgcatgttcgtgtagataaaacaagaaaa
attaatgcccatgtcttaatgagggcaatgggtttatcagataatgacgttatagataaa
ttacgacatcctgagttttataaaaagtcaattgatgcggcaaatgaagaaggtataagt
tcagaagaccaagcattgttagagctttataaaaagttaagaccaggtgaacctccatca
gtaagtggtggccaacagctactccaaacaagattttttgatccaaaacgatatgattta
ggaagggttggtagatataaaataaataagaaattacgcttaactattcctgataattta
agaacactaaccaacgaagatgttctttctaccttagattatttaatcaatttagaatta
gatgttggtggagctactttggatgatattgatcatttaggtaatagaagagttaggtca
gtcggtgaacttctacaaaatcaagttcgagttggtttaaatagacttgaaaggataatt
aaagagaggatgaccgttggtgagacagattcacttactcctgcgcaattggtaaatcca
aaacctttagtagcagcaataaaagaattttttggttcaagtcaattaagtcaattcatg
gatcaaaccaatccattagctgaattaactcataaaagacgtatctctgctttgggacca
ggaggtttaactcgtgaaagagctggctttgccgttcgggatattcatccatctcactac
ggaagactttgtccgattgaaacacctgaaggaccaaatgcaggtctgattaattcgtta
gcaactcacgcacgagtaaatgaatacggttttattgagacaccattttggaaagttgaa
aatggtcgattaattaaggaaggtgatcctatttatctttctgcagatctagaagatgaa
tgtagggttgcgccaggtgatgtggctacaaacgaagaggggaaaataatggcagaactt
gttccagttaggtatcgacaagattttgaaacggtttctcccgaacaagttgattatgtc
caactatcacctgttcaggttatttctgtagctgcatcattaattccatttctggaacac
gatgatgctaacagggctttgatgggttccaacatgcaaagacaagcagttcctcttttg
cgtccagaaaggcctttagttgggactggtttagagactcaagttgctagagactctggc
atggttccaatttcaaaagtaaatggaacagtgagttatgttgacgccaatgcaattgtc
gttactgatgatgagggaaatgatcacacgcattacttgcaaaaatatcagagatctaat
caagatacttgtttaaaccataggcctatagtttttaatggtgacccagtaattgtgggg
caagttttagctgatggttcggcatgtgaaggaggggaaatagctcttggtcaaaatgta
ttaattgcatacatgccatgggaagggtacaactatgaagatgcaattcttgttagtgaa
aggttagttaaagatgatctatatacctctgtccatatagaaaaatatgaaatagaagct
cgtcaaaccaagctaggtccagaagaaataacaagagaaattccaaatgtttcagaagaa
aaccttgggaatttggatgaaatgggaataatacgaataggggcttacgttgagagtggt
gacatacttgttggaaaagtaacccctaaaggagaatcagatcagcctcctgaggaaaaa
cttttaagagctatttttggagaaaaagctagagatgtaagagataactctctccgagtt
ccctcaactgaaagaggaagagtagttgatgtaaggatctatacaagagagcaaggtgat
gagttaccacctggcgcaaatatggttgtaagagtctatgtagcgcaacgcaggaaaata
caagttggcgataaaatggcaggaaggcatggcaataaagggattataagcagaatactg
ccaagagaggatatgccttatcttcctgatggcacacctgtagacatatgcctcaatcca
cttggggtcccaagcagaatgaatgtagggcaagtctttgagcttcttatgggttgggct
gcctcaaacttggattgcagagttaaaattgtcccatttgatgagatgtatggaccagaa
atgtctaatcagactgtacaagcctatttaaaagaggctgcaaagcagccaggtaaatca
tgggtatacaaccctaaggaccctgggaagttactccttaaggatggccgaaccggtgaa
ccttttgatcaaccagttgccgttggctacgctcacttcctaaaacttgtgcacctagtc
gatgataaaattcatgctcgatcaacaggtccatattctttagttactcaacagcctcta
ggtggaaaggctcaacaaggaggccagagacttggggaaatggaggtatgggcacttgag
gcttatggggcagcatacactttacaagaacttttaactgtaaagtctgacgatatgcaa
ggtcggaatgaggctcttaattctattgttaaaggcaagccaattccaaggcctgggact
ccagaatctttcaaggttttaatgagagaacttcagtcattgggattagatattggagtt
tatacagatgatggaaaagaagttgatctaatgcaagatgtaaatcctcgtagaagcacg
ccaagtagacctacctatgaatcattaggtaaagaatacgaggagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   CYANOBASE (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (6)   
   Pfam (6)   
All databases (19)   

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