KEGG   Pseudoxanthomonas mexicana: H4W19_07685
Entry
H4W19_07685       CDS       T06805                                 
Symbol
rnr
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
pmex  Pseudoxanthomonas mexicana
Pathway
pmex03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pmex00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    H4W19_07685 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pmex03019]
    H4W19_07685 (rnr)
   03016 Transfer RNA biogenesis [BR:pmex03016]
    H4W19_07685 (rnr)
Enzymes [BR:pmex01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     H4W19_07685 (rnr)
Messenger RNA biogenesis [BR:pmex03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     H4W19_07685 (rnr)
Transfer RNA biogenesis [BR:pmex03016]
 Prokaryotic type
  tRNA degradation factors
   H4W19_07685 (rnr)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 RNase_II_C_S1
Other DBs
NCBI-ProteinID: QND81613
UniProt: A0A7G6URG6
Position
complement(1611140..1613605)
AA seq 821 aa
MTKKTTRNGGKSGAGKGSTPRTKSAGQRSGKPAKTGKSLPPWMPDLPPTGGGAKSSAPAT
RRAAPARTSGRFVDPHAQREAQRYDQPIASREAILGFLEAAEGPQTAEEIAGPLGLQAPD
RFEALSKRLGAMVRDGQLVQNRRGGFAPVQHTALIAGTVIANPDGFGFLRPDAGGGDDLF
LPPYEMRKVMHGDRALANVTGIDRRGRREGSIARVLERGVTRLIGRFGFEVGIAYVAPDD
KRIQRNVQIPQDATGGARDGQLVVVELTQAPDARRPPIGKVIAVLGDSLTPSLVVEAAIH
GHNLPHEFPQEVLDEATAVPLVIEPAMIGNRVDLREMPLVTIDGADAKDFDDAVYCESNR
QGLRMKNRSGYRLVVAIADVSHYVRPGTPLDDEAQKRATSVYFPGFVVPMLPETLSNGIC
SLNPKVDRMCFVCDMQVNSEGEVTQSKFYEAVMRSHARLTYDQVWKAVGEGDAEARQSIG
ALLPQVERLHELYGLLAKAREKRGAIEFETSEVRFELDNRGEVTQAGMLQRNDAHKLIEE
CMIAANVEAARFLLGARIPAPYRVHDRPPESKYADLLEFLKEFKLSLPPWGKVQPRDFTQ
LLKKIRERPDVALLESVVLRSQSLAVYSPDNAGHFGLALEAYAHFTSPIRRYPDLLVHRA
IKYALTKGKPEKFQYSEHEMAALSLQCSERARRADEAEREVDERYRAAWMEQHVGGQFDG
VISGVTSFGLFVELDQSKVNGLVHVTQLPHDYYHFDPLRKTLSGERRGMSFRLGDRVRII
VLKASLEERKIDFRLVEDKQDQGLPPPPPRGQPAKRTKKKY
NT seq 2466 nt   +upstreamnt  +downstreamnt
atgaccaagaaaaccacacggaacggcggcaagagcggcgccggcaagggaagcaccccg
cgcacgaagagtgccgggcagcgatcgggcaaacccgccaagaccgggaagagcctcccc
ccctggatgcctgacctcccgccgaccggcggcggggcgaagtcttcggcgccggccacg
cgccgcgccgcgcccgcgcgcacgtcggggcgtttcgtcgacccgcacgcgcagcgcgaa
gcgcaacgttatgaccagcccatcgccagtcgcgaagccatcctcggtttcctcgaggcc
gccgagggaccgcagacggccgaggagatcgccggtccgctgggcctgcaggcacccgac
cgcttcgaggccctgtccaagcgcctgggcgcgatggtccgcgacggacaactggtgcag
aaccggcgcggcggttttgcgccggtgcagcacactgcgctgatcgccggcacggtgatc
gccaacccggacggtttcggcttcctgcggcccgacgccggcggaggcgacgacctgttc
ctgccgccctatgaaatgcgcaaggtcatgcatggcgaccgcgcgctggccaacgtcacc
ggcatcgaccggcgcggccgccgcgaaggcagcatcgcgcgcgtgctggaacgcggggtc
acccggctgatcggccgtttcggcttcgaggtcggcatcgcctacgtggcgcccgacgac
aagcgcatccagcgcaacgtgcagatcccgcaggacgccaccggtggcgcgcgcgacggc
cagctggtggtggtcgagctgacccaggcgccggatgcgcgtcgtccgcccatcggcaag
gtcatcgccgtgctgggcgacagcctgacgccgtcgctggtggtggaggccgcgatccac
ggccacaacctgccgcacgagttcccgcaggaggtactggacgaggccacggccgtaccg
ctggtgatcgagccggcgatgatcggcaaccgcgtcgacctgcgcgagatgccgctggtg
accatcgacggcgccgatgcgaaggacttcgacgatgcggtgtattgcgaaagcaatcgc
cagggcctgcgcatgaagaaccgcagcggctaccgcctggtcgtggccatcgccgatgtc
tcgcactacgtgcgtcccggcacgccgctggacgatgaagcgcagaagcgtgcgacgtcg
gtgtacttcccgggtttcgtggtgcccatgctgccggagaccttgtccaacggcatctgc
tcgctgaatccgaaagtggaccgcatgtgcttcgtctgcgacatgcaagtcaacagcgag
ggcgaagtcacccagtcgaagttctacgaggcggtgatgcgttcgcacgcacgcctgacc
tacgaccaggtgtggaaggcggtgggcgagggcgacgccgaggcccgccagtccatcggc
gcgctgctgccgcaggtcgagcgcctgcacgagttgtatggcctgctcgccaaggcgcgc
gagaagcgcggcgcgatcgagttcgagacgtccgaagtccgcttcgaactggacaatcgc
ggggaggtcacccaggccggcatgctgcagcggaacgatgcgcacaagctgatcgaggaa
tgcatgatcgcggccaacgtggaggccgcccggttcctgttgggcgcgcgcattcccgcg
ccgtaccgcgtgcacgaccggccgccggaatccaagtacgccgacctgctcgagttcctc
aaggaattcaagttgagcctgccgccctggggcaaggtgcagccacgggatttcacccag
ttgctgaagaagatccgcgagcgtcccgacgtggccctgctggaatcggtggtgctgcgc
agccagagcctggcggtctactcgccggacaatgccggtcacttcggtctggcgctggaa
gcctatgcgcacttcacttcgccgatccggcgatatcccgacctgctcgtgcaccgcgcc
atcaagtacgcgctgaccaagggaaagccggagaaattccagtattccgaacacgagatg
gcggcgctttcgctgcagtgttccgaacgcgcgcgccgtgccgacgaagccgagcgcgag
gtcgacgaacgctaccgcgcggcctggatggagcagcatgtcggcggccagttcgacggc
gtcatcagtggcgtcaccagcttcggcctgttcgtggagctggaccagtccaaggtcaac
gggctggtccacgtgacccagctgccgcacgactattaccacttcgatccgctccgcaag
acgctgtccggcgagcgtcgcggcatgtcgttccggctgggcgaccgggtgcgcatcatc
gtgctgaaggccagcctggaagagcgcaagatcgacttccgcctggtggaggacaagcag
gaccagggcctgccgccgcctccgccgcgtggccagccggccaagcgcacgaagaagaag
tactga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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