KEGG   Pseudoxanthomonas mexicana: H4W19_17930
Entry
H4W19_17930       CDS       T06805                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
pmex  Pseudoxanthomonas mexicana
Pathway
pmex03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pmex00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    H4W19_17930 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pmex03021]
    H4W19_17930 (rpoC)
   03400 DNA repair and recombination proteins [BR:pmex03400]
    H4W19_17930 (rpoC)
Enzymes [BR:pmex01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     H4W19_17930 (rpoC)
Transcription machinery [BR:pmex03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     H4W19_17930 (rpoC)
DNA repair and recombination proteins [BR:pmex03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      H4W19_17930 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C
Other DBs
NCBI-ProteinID: QND80158
UniProt: A0A7G9TH37
Position
3844306..3848535
AA seq 1409 aa
MKDLLNLFNQQRQTLDFDAIKIALASPDLIRSWSFGEVKKPETINYRTFKPERDGLFCSA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFEAYVVTEPGLTSLERRQLLTEEQFMQARQEHGDDFDAAM
GAEAVYDLLRTIDLQAEMVNLREEIASTNSETKLKRLTKRIKLIEAFLESGNRPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALMDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHECGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEADVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSSNNILSPANGEPIIVPSQDVVLGLYYMTRALENKKGEGMAFANIAEVKRAYDNR
AVELHAKVKVRISGTVIDEEGGRSKQTSIVDTTIGRALLAEILPEGLPFALVNTELNKKA
ISRLINSSYRMLGLKDTVVFADKLMYTGFAYATRAGVSIGIDDMLIPAEKKGILGEAEQE
VLEIQEQYQSGLVTAGERYNKVVDIWSRTNERIAKAMMDTIGTDKVKNAKGETINEKSMN
SLYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVQEYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEVDCGTSEGLMMTPIVEGGDVVEPLRDRVL
GRIVAEDVFLPGNDEDPIVTRNTLLDEAWVQKLEDAGVQALKVRSTITCESDFGVCAHCY
GRDLARGHIVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNITVKTTGSIK
FNNLKFVEHANGSLVAVSRSGELSVLDGHGRERERYKLPYGATINVKDGDQITAGQAVAN
WDPHNHPIVSEVAGFVRFVDFVDGVTVIEKTDELTGLASREITDPKRRGSQGKDLRPIVR
IVDKDGKDLSIPGTDLPAQYLLPPRSIVNLQDGAPVGVGDVVTKVPQEASKTRDITGGLP
RVADLFEARKPKDPAILAERSGIISFGKDTKGKQRLIIKDTDGSEHEELIPKFRQIIVFE
GEHVAKGETIVDGEPSPQDILRLLGVEPLAAYLVKEIQDVYRLQGVKINDKHIEVITRQM
LRKVEITDAGNSKFLAGEQVEKQRVIEENAKLAARNELPAKYDPVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTRDTLRGLKENVIVGRLIPAGTGLAYHNQRRRNASGLTEAE
VDALSGVVSEPVAPAAVASDEAGEESSAS
NT seq 4230 nt   +upstreamnt  +downstreamnt
atgaaagacctgctcaacctcttcaaccagcagcgccagacgctggacttcgacgcgatc
aagatcgcgctggcctcgccggacctgatccgttcgtggtccttcggcgaagtgaagaag
ccggaaaccatcaactaccgtacgttcaagcccgagcgcgacggcctgttctgctcggcc
atcttcggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgcggcgtggtctgcgagaagtgcggcaccgaggtgacgctggccaaggtgcgccgcgag
cgcatgggccacatcgacctggccagcccggtcgcgcacatctggttcctgaagtcgctg
ccgtcgcgcatcggcctgatgctggacatgaccctgcgcgacatcgagcgcgtgctgtac
ttcgaagcctatgtcgtcaccgagccgggcctgacctcgctcgaacgccgccagctgctg
accgaagagcagttcatgcaggcgcgccaggaacatggcgacgacttcgacgccgccatg
ggcgccgaggccgtctacgacctgctgcgcaccatcgacctgcaggccgagatggtgaac
ctgcgcgaagaaatcgccagcaccaactccgagaccaagctcaagcgcctcaccaagcgc
atcaagctgatcgaggcgttcctggagtcgggcaaccgtccggaatggatggtcatgacc
gtgctgcccgtgctgccgccggacctgcgtccgctggtgccgctggatggcggccgcttc
gcgacctccgacctgaacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctgcgc
cgtctgctggagctcaacgcgcccgacatcatcgtgcgcaacgaaaagcgcatgctgcag
gagtccgttgacgccctgatggacaacggccgccgcggccgcgccatcaccggcaccaac
aagcgcccgctcaagtcgctggccgacatgatcaagggcaagcagggccgcttccgccag
aacctgctgggcaagcgcgtcgactactcgggccgttcggtcatcgtggtcggtccgacc
ctgcgcctgcacgagtgcggcctgccgaagaagatggcgcttgagctgttcaagccgttc
gtgttcgccaagttgcagcgccgtggcctggccacgacgatcaaggccgccaagaagctg
gtcgagcgcgaagaagccgacgtctgggacatcctggaagaggtgatccgcgagcacccg
gtgctgctgaaccgcgcgccgaccctgcaccgcctgggcatccaggcgttcgagcccgtg
ctgatcgagggcaaggccatccagctgcatccgctggtctgcaccgcattcaacgccgac
ttcgacggcgaccagatggccgtccacgtgccgctctcgctggaagcccagctggaagcg
cgcgcgctgatgatgtcgtccaacaacatcctgtcgcccgccaacggcgagccgatcatc
gtgccgtcgcaggacgtcgtgctgggcctgtactacatgacccgcgcgctggagaacaag
aagggcgagggcatggcgttcgccaacatcgccgaggtcaagcgcgcttacgacaaccgc
gccgtcgagctgcacgccaaggtcaaggtccgcatcagcggcaccgtgattgacgaggaa
ggtggccgcagcaagcagaccagcatcgtggacaccacgatcggtcgcgcgctgctggcc
gagatcctgccggaaggcctgccgttcgccctggtgaacaccgagctgaacaagaaggcc
atcagccgcctgatcaattccagctaccgcatgctgggtctgaaggacacggtcgtgttc
gccgacaagctgatgtacaccggcttcgcgtacgccacgcgcgccggcgtctccatcggc
atcgacgacatgctgatcccggccgagaagaagggcatcctgggcgaagccgagcaggaa
gtgctggagatccaggagcagtaccagagcggtctggtcaccgccggcgagcgctacaac
aaggtggtcgacatctggtcgcgcaccaacgagcgcatcgccaaggcgatgatggacacc
atcggcaccgacaaggtgaagaacgccaagggcgagaccatcaacgagaagtcgatgaac
tcgctctacatcatggccgactccggcgcccgtggtagccaggcccagatccgccagctg
gccggcatgcgcggcctgatggcccgccccgacggctcgatcatcgagacgcccatcaag
gcgaacttccgcgaaggcctgaacgtgcaggagtacttcaactccacgcacggtgcccgc
aagggcctggccgataccgcgctgaagaccgcgaactccggttacctgacccgtcgcctg
gtcgacgtggcgcaggacgtggtgatcaccgaggtcgactgcggcacgtcggaaggcctg
atgatgaccccgatcgtggaaggcggcgacgtggtcgagccgctgcgtgaccgcgtgctg
ggccgcatcgtggccgaggacgtgttcctgccgggcaacgacgaggatccgatcgtcacc
cgcaacacgctgctggacgaagcctgggtgcagaagctggaagacgccggcgtgcaggcg
ctgaaggtgcgctccaccatcacctgcgagtccgatttcggcgtctgcgcccactgctat
ggccgcgacctggcccgtggccacatcgtcaacatcggcgaagcggtcggcgtcatcgcc
gcgcagtcgatcggcgagcccggcacccagctgaccatgcgtacgttccacatcggtggt
gcggcatcgcgtgcggcggcggtcgacaacatcaccgtcaagaccaccggctcgatcaag
ttcaacaacctgaagttcgtcgagcacgccaacggcagcctggtcgccgtctcgcgttcg
ggtgaactgtcggtgctcgacggccacggccgcgagcgcgagcgctacaagctgccctac
ggcgccaccatcaacgtcaaggacggcgaccagatcaccgccggccaggccgtggcgaac
tgggatccgcacaaccacccgatcgtgtcggaagtggccggtttcgtgcgcttcgtcgac
ttcgtcgacggcgtcaccgtcatcgagaagaccgacgaactgaccggtctggcctcgcgc
gagatcaccgatccgaagcgtcgcggttcgcagggcaaggacctgcgtccgatcgtccgc
atcgtggacaaggacggcaaggacctgagcattccggggaccgacctgccggcgcagtac
ctgctgccgccgcgctcgatcgtcaacctgcaggacggcgcgcccgtcggcgtgggcgac
gtggtcaccaaggtgccgcaggaagcgtccaagacgcgcgacatcaccggcggtctgccg
cgcgtggccgacctgttcgaagcccgcaagccgaaggacccggccatcctggccgagcgt
tccggcatcatcagcttcggcaaggacaccaagggcaagcagcgcctgatcatcaaggac
accgacggttccgagcacgaggagctgatcccgaagttccgccagatcatcgtgttcgaa
ggcgagcacgtggccaagggcgaaaccatcgtggatggcgagccgagcccgcaggacatc
ctgcgcctgctgggcgtcgagccgctggccgcctacctggtgaaggagatccaggacgtt
taccgcctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcacccgccagatg
ctgcgcaaggtcgagatcaccgatgccggcaacagcaagttcctggcaggcgagcaggtc
gagaagcagcgcgtgatcgaggagaacgccaagctggccgcgcgtaacgagctgcccgcc
aagtacgatcccgtgctgctgggcatcaccaaggcgtcgctggcgaccgaatcgttcatc
tccgcggcctccttccaggagaccacccgcgtgctgaccgaggcggctgtccgtggtacg
cgcgataccctgcgtggcctgaaggagaacgtcatcgtcggtcgcctgatcccggccggc
accggtctggcgtaccacaaccagcgccgccgcaatgcctccggtctgaccgaggccgag
gtcgacgccctgtccggcgtcgtcagcgagccggtcgccccggcggccgtggcctcggac
gaggcgggcgaggagtccagcgccagctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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