KEGG T01473: MDS

Pseudomonas mendocina NK-01: MDS_1900

Entry

MDS_1900          CDS       T01473

Name

(GenBank) DNA topoisomerase

K03168

DNA topoisomerase I [EC:5.6.2.1]

Organism

pmk Pseudomonas mendocina NK-01

Brite

KEGG Orthology (KO) [BR:pmk00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pmk03032]
    MDS_1900
   03400 DNA repair and recombination proteins [BR:pmk03400]
    MDS_1900
Enzymes [BR:pmk01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     MDS_1900
DNA replication proteins [BR:pmk03032]
Prokaryotic type
  DNA Topoisomerases
   MDS_1900
DNA repair and recombination proteins [BR:pmk03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      MDS_1900

SSDB

Motif

Pfam:

Topoisom_I Top1B_N_bact Acetyltransf_5 Integrase_DNA

Other DBs

NCBI-ProteinID:

AEB57931

Position

complement(2078829..2079845)

AA seq 338 aa
MPGDIDLPPDLRYVDDSMPGISRRKLRGKFCYFDSQGQRIRDKQEVARIDALAVPPAYTD
VWICPFPNGHLQATGRDARGRKQYRYHARWREIRDADKYASLLAFGKALPALREALRQHL
SLREHRREKVLATVIMLLDNTLIRVGNARYARENRSYGLTTLRNRHVEVQGSTIRFHFRG
KSGIEHEVQVSDRRLARIIQRCLELPGQHLFQYLDEDGERRAVTSTDINDYLRELTGADF
TAKHYRTWAGSALALTLLRELEWQPESAAKKHVVAMVKQVAEQLRNTPAVCRKCYIHPAL
LEAFQAGELAGIRMATPRKGLRAEESLLMRFLEKLPPA

NT seq 1017 nt +upstreamnt +downstreamnt
gtgcctggcgatatcgatctaccgcccgacctgcgctatgtcgacgacagcatgccgggc
atcagccgccgcaagctacgtggcaagttctgctatttcgacagccagggccagcgtatc
cgcgacaaacaggaggtggcgcgcatcgatgcactggctgtgccacccgcctataccgat
gtgtggatctgcccatttcccaacggccacctgcaggcaacaggccgcgatgcccgcggg
cgcaagcaataccgctaccacgcgcgctggcgcgaaatcagggatgcggacaagtacgcc
agcctgctggcattcggcaaggcactgccagcactgcgtgaagccctgcggcagcacctg
agcctgcgcgaacaccgccgtgagaaagtgctggccaccgtgatcatgctgctggataac
accctgatccgggtcggcaacgcccgttacgcgcgggagaatcgttcctatggcctgacc
accctgcgcaaccgtcacgtcgaggtgcaaggcagcacaattcgctttcacttccgtggc
aagagcggtatcgaacacgaggtgcaggtcagtgaccgccgcctggcccgcatcatccag
cgttgcctggaattgcccgggcaacacctgttccagtacctggacgaggatggcgaacgc
cgcgccgtgacctccaccgacatcaacgactacctgcgtgaactgaccggcgccgacttc
accgccaagcactaccgcacctgggccggcagcgcgctggccctgacgctgctgcgcgag
ctcgagtggcagccggaaagcgcggccaagaaacatgtggtggccatggtcaaacaagtg
gctgagcaattgcgcaatacgccggccgtctgccgcaagtgctacatccatcccgccttg
ctcgaagccttccaggccggcgagttggccggcattcgcatggcaacgccgcgcaagggc
ctgcgcgcggaagaaagcctgttgatgcgctttctggagaaactgccacccgcttga

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (13)   

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