KEGG   Prochlorococcus marinus NATL2A: PMN2A_1016
Entry
PMN2A_1016        CDS       T00267                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
pmn  Prochlorococcus marinus NATL2A
Pathway
pmn03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pmn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    PMN2A_1016
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pmn03021]
    PMN2A_1016
   03400 DNA repair and recombination proteins [BR:pmn03400]
    PMN2A_1016
Enzymes [BR:pmn01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     PMN2A_1016
Transcription machinery [BR:pmn03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     PMN2A_1016
DNA repair and recombination proteins [BR:pmn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      PMN2A_1016
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: AAZ58506
UniProt: Q46J22
Position
complement(1509791..1513078)
AA seq 1095 aa
MSRSAIQVAKAATYLPDLVEVQRSSFKWFLDKGLIEELDNFSPITDYTGKLELHFIGAEY
KLKRPRHDVEEAKRRDATFASQMYVTCRLVNKETGEIKEQEVFIGELPLMTERGTFIING
AERVIVNQIVRSPGVYFKDEQDKNGRRTYNASVIPNRGAWLKFETDKNDLLHVRVDKTRK
INAHVLMRAMGLSDNDVIDKLRHPEFYKKSIDAANEEGISSEDQALLELYKKLRPGEPPS
VSGGQQLLQTRFFDPKRYDLGRVGRYKINKKLRLTIPDNLRTLTNEDVLSTLDYLINLEL
DVGGATLDDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIKERMTVGETDSLTPAQLVNP
KPLVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRISALGPGGLTRERAGFAVRDIHPSHY
GRLCPIETPEGPNAGLINSLATHARVNEYGFIETPFWKVENGRLIKEGDPIYLSADLEDE
CRVAPGDVATNEEGKIMAELVPVRYRQDFETVSPEQVDYVQLSPVQVISVAASLIPFLEH
DDANRALMGSNMQRQAVPLLRPERPLVGTGLETQVARDSGMVPISKVNGKVTYVDANAIV
VTDDEGNDHTHYLQKYQRSNQDTCLNHRPIVFNGDPVIVGQVLADGSACEGGEIALGQNV
LIAYMPWEGYNYEDAILVSERLVKDDLYTSVHIEKYEIEARQTKLGPEEITREIPNVSEE
NLGNLDEMGIIRIGAYVESGDILVGKVTPKGESDQPPEEKLLRAIFGEKARDVRDNSLRV
PSTERGRVVDVRIYTREQGDELPPGANMVVRVYVAQRRKIQVGDKMAGRHGNKGIISRIL
PREDMPYLPDGTPVDICLNPLGVPSRMNVGQVFELLMGWAASNLDCRVKIVPFDEMYGPE
MSNQTVQAYLKKAAKQPGKSWVYNPKDPGKLLLKDGRTGEPFDQPVAVGYAHFLKLVHLV
DDKIHARSTGPYSLVTQQPLGGKAQQGGQRLGEMEVWALEAYGAAYTLQELLTVKSDDMQ
GRNEALNSIVKGKPIPRPGTPESFKVLMRELQSLGLDIGVYTDDGKEVDLMQDVNPRRST
PSRPTYESLGKEYEE
NT seq 3288 nt   +upstreamnt  +downstreamnt
atgagcagaagcgcgattcaggtagccaaagcagctacatatctgcctgatctggttgag
gtgcaaagatcaagttttaagtggtttttggataaaggcttaatagaagaattagacaat
ttttctcccattactgactatacaggtaagcttgagctgcattttattggagcagaatat
aagcttaagcgtcctaggcatgatgtagaagaagcaaaaagaagagatgcaacgtttgct
tctcaaatgtatgtcacttgtcgcttagtgaataaagaaaccggagagattaaagaacaa
gaagtttttataggtgaactacctttaatgactgaacgtggaacttttataattaatggt
gctgagagagtaatagtcaatcaaatcgttcgcagtccaggagtttatttcaaagatgag
caagataaaaatggtaggagaacttacaatgcaagcgttattcctaatcgcggagcatgg
ttaaagtttgaaactgataaaaacgatttgctgcatgttcgtgtagataaaacaagaaaa
ataaatgcccatgttttaatgagggcaatgggtttatcagataatgacgttatagataaa
ttacgacatcctgagttttataaaaagtcaattgatgcggcaaatgaagaaggtataagt
tcagaagaccaagcattgttagagctttataaaaagttaagaccaggtgaacctccatca
gtaagtggtggccaacagctactccaaacaagattttttgatccaaaacgatatgattta
ggaagggttggtagatataaaataaataagaaattacgcttaactattcctgataattta
agaacactaaccaacgaagatgttctttctaccttagattatttaatcaatttagaatta
gatgttggtggagctactttggatgatattgatcatttaggtaatagaagagttaggtca
gttggtgaacttctacaaaatcaagttcgagttggtttaaatagacttgaaaggataatt
aaagagaggatgaccgttggtgagacagattcacttacccctgcgcaattggtaaatcca
aaacctttagtagcagcaataaaagaattttttggttcaagtcaattaagtcaattcatg
gatcaaaccaatccattagctgaattaactcataaaagacgtatctctgctttgggacca
ggaggtttaactcgtgaaagagctggctttgccgttcgggatattcatccatctcactac
ggaagactttgtccgattgaaacacctgaaggaccaaatgcaggactgattaattcgtta
gcaactcacgcacgagtaaatgaatacggttttattgagacaccattttggaaagtggaa
aatggtcgattaatcaaggaaggtgatcctatttatctttctgcagatctagaagatgaa
tgtagggttgcgccaggtgatgtggctacaaacgaagaagggaaaataatggcagaactt
gttccagttaggtatcgacaagattttgaaacggtttctcctgaacaagttgattatgtc
caactatcacctgttcaggttatttctgtggctgcatcattaattccatttttggaacac
gatgatgctaacagggctttgatgggttccaacatgcaaagacaagcagttcctcttttg
cgtccagaaaggcctttagttgggactggtttagagactcaagttgctagagactctggc
atggttccaatttcaaaagtaaatggaaaagtgacttatgttgacgccaatgcaattgtc
gttactgatgacgagggaaatgatcacacgcattacttgcaaaaatatcagagatctaat
caagatacttgtttaaaccataggcctatagtgtttaatggtgacccagtaattgttggt
caagttttagctgatggttcggcatgtgaaggaggggaaatagctcttggtcaaaatgta
ttaattgcatacatgccatgggaaggatacaactatgaagatgcaattcttgttagtgaa
aggttagttaaagatgatctatatacctctgtccatatagaaaaatatgaaatagaagct
cgtcaaaccaagctaggtcctgaagaaataacaagagaaatcccaaatgtttcagaagaa
aaccttgggaatttggatgaaatgggaataatacgaataggagcttacgttgagagtggt
gacatacttgttggaaaagtaacccctaaaggagaatcagatcagcctcccgaggaaaaa
cttttaagagctatttttggagaaaaagctagagatgtaagagataactctctccgagtt
ccttcaactgaaagaggaagagtagttgatgtaaggatctatacaagagagcaaggtgat
gagttaccacctggcgcaaatatggttgtaagagtctatgtagcgcaacgcaggaaaatt
caagttggcgataaaatggcaggaaggcatggcaacaaagggattataagtagaatactg
ccaagagaggatatgccttatcttcctgatggcacacctgtagacatatgcctcaatcca
cttggggttccaagcagaatgaatgtaggacaagtctttgagcttcttatgggttgggct
gcctcaaacttggattgcagagttaaaattgtcccatttgatgagatgtatggaccagaa
atgtctaatcagactgtacaagcctatttaaaaaaggctgcaaagcagccaggtaaatca
tgggtatacaaccctaaggaccctgggaagttactccttaaggatggtcgaaccggtgaa
ccttttgatcaaccagttgccgttggctacgctcacttcctaaaacttgtgcatctagtc
gatgataaaattcatgctcgatcaacaggtccatattctttagttactcaacagcctcta
ggtggaaaggctcaacaaggaggacagaggcttggggaaatggaggtatgggcacttgag
gcttatggggcagcatatactttgcaagaacttttaactgtaaagtctgacgacatgcaa
ggtcggaatgaggctcttaattcgattgttaaaggcaagccaattccaaggcctgggact
ccagaatctttcaaggttttaatgagagaacttcagtcattgggattagatattggagtt
tatacagatgatggaaaagaagttgatctaatgcaagatgtcaatcctcgtagaagcacg
ccaagtagacctacctatgaatcattaggtaaagaatacgaggagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (6)   
   Pfam (6)   
All databases (18)   

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