KEGG   Pyruvatibacter mobilis: HG718_05035
Entry
HG718_05035       CDS       T06559                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
pmob  Pyruvatibacter mobilis
Pathway
pmob03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pmob00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    HG718_05035 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pmob03021]
    HG718_05035 (rpoC)
   03400 DNA repair and recombination proteins [BR:pmob03400]
    HG718_05035 (rpoC)
Enzymes [BR:pmob01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     HG718_05035 (rpoC)
Transcription machinery [BR:pmob03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     HG718_05035 (rpoC)
DNA repair and recombination proteins [BR:pmob03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      HG718_05035 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Biotin_lipoyl_2 RPOC_hybrid ApbA_C
Other DBs
NCBI-ProteinID: QJD74825
Position
1086010..1090206
AA seq 1398 aa
MNQEVLSNVFNPSGVAETFDAIKISIAAPEKILSWSYGEVKKPETINYRTFKPERDGLFC
ARIFGPTKDYECLCGKYKRMKYKGIICEKCGVEVTLSKVRRERMGHIELAAPVAHIWFLK
SLPSRIGLLLDMALKDLERVLYFESYIVTEPGLTPLKLHQLLTEDEYIDAQDEYGEDAFT
AGIGAEAIRDMLMALDLEKIAAELRVEIAEATTELKPKKLAKRLKVVEAFMESGNRPEWM
IMTVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKR
MLQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVV
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLAATIKQAKKLVEKEKPEVWDILEEVIR
EHPVMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNILHPADGTPIIVPSQDIVLGLYYLSLEKENEPGEGMVFADVKEIEHAL
DAGAVTLHAKVKARWITKDEDGNDVSHVLDTTPGRMLIGDLLPRHPNVPYDLVNKLMTKK
AISAMIDVVYRHTGQKETVIFCDRIMGLGFARACRAGISFGKDDMVVPEAKEDLVEKTRT
LANEYEQQYIDGLITQGEKYNKVVDAWAKCTDAVAEEMMGKISSVQIDEETNRTKDINSI
YMMSHSGARGSPAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKG
LADTALKTANSGYLTRRLVDVAQDCIIIEPDCGSEEGLTVGAVIDSGEVLASLGSRILGR
TPANDIVHPSTGEVIVPKGEEITEPLVELVEAAGIQQVLIRSVLTCKTRGGVCGKCYGRD
LARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQVVDSSFIESNHAGSVTISNP
ELVTDSSGNIIVMGRNSQIIVSDAEGTELATHRLSYGTRLRVKDGDQVERGQRMAEWDPY
TLPIITEREGIVAFEDVIDGVTIREVADEATGISSKVVVDWRASTRSADLKPAIVLKGKN
GQVLKLANGNEARYLLSVDAILSVEDGAEVHAGDVLARIPTEGAKTRDITGGLPRVAELF
EARRPKDNAVIAEADGVVEFGRDYKNKRRIIVRPKDESIEPVEYLIPKGKHLSVREGDFI
EKGEYLLDGNPAPHDILAISGVEELARYLVNEIQEVYRLQGVNINDKHIEVIVRQMLQKV
EVTDAGDTSLLSGEQLDRVEFDEINEKVEAEGGTPAKGNPVLLGITKASLQTRSFISAAS
FQETTRVLTEASVSGKQDHLIGLKENVIVGRLIPAGTGALLNRLKHEAADRDETIMDSRG
VTAPVLEEGEAEAAGEVA
NT seq 4197 nt   +upstreamnt  +downstreamnt
atgaaccaggaagtcctcagcaacgttttcaacccctcgggcgtcgccgagacgttcgat
gcgatcaagatctcgatcgctgcgccggagaagattctctcctggtcgtatggtgaggtg
aagaagccggaaaccatcaactaccgtactttcaagccggagcgtgacggcctgttctgc
gcgcgcatctttggtccgaccaaggactatgagtgcctgtgcggcaagtacaagcggatg
aagtacaagggcatcatctgcgaaaagtgcggcgtggaagtgaccctctcgaaggtccgc
cgcgagcgcatgggccacatcgagctggccgcgcctgtcgcccatatctggttcctgaag
tcgcttccgtcccggatcggtcttctgctggacatggcgctgaaggatcttgagcgcgtt
ctttacttcgagagctatatcgtcaccgagccgggcctgacgccgctgaagctgcatcag
ctcctgaccgaagacgaatacatcgatgcgcaggacgagtacggcgaagatgctttcact
gccggcattggtgctgaagcgatccgcgacatgctgatggcgctcgaccttgagaagatc
gccgccgagctgcgcgtcgagattgccgaggcgaccaccgagctgaagccgaagaagctc
gccaagcgcctgaaggttgttgaggccttcatggaatccggcaaccgtccggaatggatg
atcatgacggtcgtgccggtcattccgccggaactgcgcccgctggtgccgcttgatggc
ggccgcttcgcgacgtccgacctcaacgatctttatcgccgcgtcatcaaccgtaacaac
cgcctgaagcggctgatggagctgcgcgcgccggacatcatcatccgcaacgaaaagcgc
atgcttcaggaagcggttgatgccctgttcgacaatggccgccgtggccgtgtcatcacc
ggtgccaacaagcgaccgctgaagtcgctgtccgacatgctcaagggcaagcagggccgc
ttccgtcagaacctgctcggcaagcgcgtcgactattccggtcgttcggtgatcgtggtg
ggcccggagctcaagctgcatcagtgcggcctgccgaagaagatggcgcttgagctgttc
aagccgttcatctattcgcgcctcgaggccaagggtctggctgcgaccatcaagcaggcc
aagaagctggtcgagaaagagaagccggaagtctgggatatcctcgaagaggtgatccgc
gagcatccggtcatgctcaaccgtgcgccgacgcttcaccgtctgggcatccaggccttc
gagccgaccctcatcgaaggtaaggccattcagctgcacccgctcgtctgcgcggcgttc
aacgccgactttgacggtgaccagatggccgtgcacgtgcctctgtcgctcgaagcgcag
ctcgaagcccgtgtgctgatgatgtccaccaacaacatcctgcatccggctgacggtacg
ccgatcatcgtgccgtctcaggatatcgtgcttggtctctactatctctcgctggagaag
gagaacgagccgggcgagggcatggtgtttgccgacgtcaaggaaatcgagcacgcgctc
gatgccggtgctgtcacgctgcacgccaaggtgaaggcccgctggatcaccaaggatgag
gacggcaacgacgtgtcccacgtgctggacacgacgccgggccgcatgctgatcggtgac
ctgctgccgcgtcatccgaacgtgccctatgacctcgtcaacaagctgatgaccaagaag
gccatctccgcgatgatcgacgtggtgtaccgccacaccggtcagaaggagacggtgatc
ttctgtgaccggatcatgggtcttggttttgcccgtgcctgccgcgccggcatctcgttc
ggcaaggacgacatggtggtgcccgaggcgaaggaagatctggtcgagaagacccgtacc
ctcgccaatgagtacgagcagcagtacatcgacggcctgatcacgcagggcgagaagtac
aacaaggtcgttgacgcctgggccaagtgcacggacgccgtggccgaggaaatgatgggc
aagatctcgtcggtgcagatcgacgaagagacgaaccgcaccaaggacatcaactcgatc
tacatgatgtcccattccggtgcccgtggttcgcccgctcagatgaagcagcttgccggc
atgcgtggcctgatggccaagccgtcgggcgaaatcatcgagacgccgatcatctcgaac
ttcaaggaaggcctgaccgtgctcgagtacttcaactcgacccacggtgcacgtaagggc
cttgccgacaccgcgctcaagaccgccaactcgggttacctgacccgtcgtctggtggac
gtggcgcaggactgcatcatcatcgagccggattgcggcagcgaagaggggctgaccgtc
ggcgccgtcatcgacagcggtgaagtgttggcgtcgctcggcagccgtatccttggccgt
accccggccaatgacatcgtgcatccgtcgacgggcgaagtgatcgtgccgaagggcgaa
gagatcaccgagccgctggtggaactggtggaagctgccggtatccagcaggtgctgatc
cggtcggtgctgacctgtaagacgcgcggcggtgtttgcggcaagtgctatggccgtgac
ctggcccgcggtacgcccgtcaacatgggcgaagctgtcggcgtcatcgccgcccagtcg
atcggtgaaccgggcacccagttgaccatgcgtaccttccacattggtggcacggcgcag
gtggttgactcctcgttcatcgagtccaaccatgcgggctctgtgaccatttccaatccg
gaactggtgacggacagctcgggcaacatcattgtgatgggccgcaactcgcagatcatc
gtgtctgacgcggaaggcactgagcttgccacgcaccgtctgtcctatggcacgcgcctg
cgtgtgaaggatggggatcaggtcgagcgcggtcagcgtatggctgaatgggatccctat
accctgccgatcatcaccgagcgtgagggcatcgttgccttcgaggatgtgatcgacggt
gtgaccatccgtgaagtggcggatgaagcaacgggtatctcgtccaaggtggttgtggac
tggcgtgcgtcgacccgctcggcggacctcaagccggccatcgtgctcaagggcaagaac
ggccaggtgctgaagctcgccaatggcaacgaggcccgctacctcctgtcggtggacgcc
attctctccgtcgaagacggggcggaggtccatgccggtgacgtgctggcacgtattcca
acggaaggtgccaagacgcgtgacattaccggtggtctgccgcgcgttgcggaactgttc
gaagcacgccgtccgaaggacaacgccgtcatcgcggaagccgatggcgtggtcgagttc
ggccgtgactacaagaacaagcgccgcatcatcgtgcgcccgaaggatgagagcatcgag
cctgtcgaatatctcatccccaagggcaagcatctgtcggtgcgcgagggcgatttcatc
gagaagggtgaatacctgctcgacggcaacccggcaccgcatgacatccttgccatttcg
ggtgtcgaggagctcgcacgctacctcgtcaacgaaatccaggaggtctatcgcctgcag
ggtgtgaacatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcagaaggtt
gaggttacggatgctggcgacacgtcgcttctgtcgggcgagcagctcgaccgcgtcgag
ttcgacgagatcaatgagaaggtggaggccgaaggcggcacgccggccaagggcaacccg
gttctgctgggtatcaccaaggcctcgctgcagacgcgttcgttcatctcggcggcctcg
ttccaggagaccacgcgcgtcctgactgaagcttcggtcagcggcaagcaggaccacctg
atcggcctcaaggaaaacgtcatcgtgggccgcctcattccggcgggcacgggtgcgctt
ctcaaccgtctcaagcatgaggcggcggaccgcgacgagactatcatggatagccgtggt
gtcactgccccggtccttgaagagggcgaggcggaggctgctggcgaagttgcttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (8)   
   Pfam (8)   
All databases (17)   

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