KEGG   Pseudomonas soli: O165_003655
Entry
O165_003655       CDS       T03276                                 
Name
(GenBank) ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
pmos  Pseudomonas soli
Pathway
pmos03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pmos00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    O165_003655
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pmos03019]
    O165_003655
   03009 Ribosome biogenesis [BR:pmos03009]
    O165_003655
Enzymes [BR:pmos01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     O165_003655
Messenger RNA biogenesis [BR:pmos03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     O165_003655
Ribosome biogenesis [BR:pmos03009]
 Prokaryotic type
  rRNA processing factors
   O165_003655
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1
Other DBs
NCBI-ProteinID: AIN57445
UniProt: A0AA86F3X7
Position
complement(726817..730005)
AA seq 1062 aa
MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSE
RHGFLPLKEISREYFKKAPEGRVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLTVPGDMGLIVRTAGLGRSSEEMQWDLD
YLLQLWTAIKEASLDRTAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIR
QVMPQYASKVKLYEDSVPLFNRFQIESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINS
ARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREC
LEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAILRL
IEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHFEVQ
RLRDDNPDVLNNQSSYEIASAETEEAPLPTATRTLVRQEAAVKTAPARANAPVPAAVEEQ
PAAPVAAAPSVPEPSLFKGLVKSLVSLFAGKEEPAAAPAVTTEKPATERSPRNEERRNGR
QQSRNRNGRREEDRKPREERSERAPREERQPREERAPREERAPREERQRQPREDRRGNRE
ERVRELREPLDAAPAPAAREERAPREERAPREERVAREERAPREERAPREERAPREERAP
REERAPREERAPREERAPREERAPREERAPREERQLRPEAQAVEQAAELAEEQLPNDELL
QDEQEGTDGERPRRRSRGQRRRSNRRERQRNANGELIEGDEDAGEEQQPQQHQATELGAE
LAAGTAVIAAVATSNISADAEAQANQQAERASAAVAETQVEITEVVAEQVAIAPVVEQPV
SEPVVAVEPSIEPVVEVAPQPVVEEAPAEQPAVVAEALQAPAVEAGEIEQPQVVEATVVE
APVAEQPVAVVEPVVEAQPEVTEAPAAEPAPVVAEQAPEEAPAPVEAPSAMLANGRAPND
PREVRRRKREAEAAAAAAAQAAAEAAPAQALETADEHKPHHG
NT seq 3189 nt   +upstreamnt  +downstreamnt
atgctgattaacgcaactcaacccgaagagttgcgtgtagccctggtggacggccaacgc
ctctacgacctggacatcgagtccggtgcccgtgagcagaaaaaggccaacatctacaaa
ggcaagatcacccggatcgagcccagccttgaagccgccttcgtcgacttcggctccgaa
cgtcacggcttcctgccgctgaaggaaatctcccgcgaatacttcaagaaagcccctgaa
ggccgggtcaacatcaaggaagtcctgagcgaaggccaggaagtcatcgtccaggtcgag
aaggaagagcgcggcaacaaaggcgccgccctgaccaccttcatcagcctggccggccgc
tacctggtgctgatgcccaacaacccgcgcgccggcggcatctcccgccgcatcgaaggc
gaagagcgcaacgagctgcgtgaagcactgaacggcctgaccgttccgggcgacatgggc
ctgatcgtgcgtaccgcgggccttggccgcagcagcgaagaaatgcagtgggacctcgac
tacctgctgcagctgtggaccgccatcaaggaagcctcgctggaccgtaccgcgccgttc
ctgatctaccaggaaagcaacgtcatcatccgcgccatccgcgactacctgcgccaggac
atcggcgaagtgctgatcgacagcatcgacgcccaggaagaagccctgaccttcatccgc
caggtgatgccgcagtacgccagcaaggtcaagctgtacgaagacagcgtgccgctgttc
aaccgcttccagatcgaaagccagatcgagaccgccttccagcgcgtcgtcgacctgccg
tccggcggctcgatcgtgatcgacccaaccgaagccctggtttccatcgatatcaactcg
gcgcgcgccaccaagggcagcgacatcgaggaaaccgccctgcagaccaacctggaagcg
gccgaagagatcgcccgccagctgcgcctgcgtgacatcggcggcctgatcgtcatcgac
ttcatcgacatgaccccggcgaagaaccagcgcgccgtcgaagaacgcgtgcgcgaatgc
ctcgaggccgaccgcgcccgtgtgcaggtcggccgcatctcgcgcttcggcctgctggaa
atgtcccgccagcgcctgcgcccatcgctgggcgagagcagcggcatcgtctgcccgcgc
tgctcgggtaccggcatcatccgtgacgtcgagtcgctgtcgctggcaatcctgcgcctg
atcgaggaagaagccctgaaggaccgcaccgccgaggtgcgcgcccaggtaccgatcccg
gtggccgccttcctgctcaacgagaaacgcaactcgatcaccaagatcgagctgcgcact
cgcgcgcgcatcatcatcctgccgaacgaccacctggaaaccccgcatttcgaagtccag
cgcctgcgcgacgacaacccggacgtgctgaacaaccagtccagctacgaaatcgcctcg
gccgagaccgaagaagcgccgctgccgaccgccacccgcaccctggtacgccaggaagcc
gcggtgaagaccgcaccggcccgcgccaacgcaccggtaccggccgctgtcgaagagcag
ccagccgcacccgtggcagcggcgcctagcgtaccggagccaagcctgttcaagggcctg
gtcaagtcgctggtcagcctgttcgccggcaaggaagagcctgccgccgcaccggccgtc
accaccgaaaaaccggccacggagcgttcgccacgcaacgaggagcgccgcaacggtcgc
cagcagagccgcaaccgcaatggccgccgcgaggaagaccgcaagccgcgtgaagaacgc
agcgagcgcgccccgcgtgaagagcgccagccacgcgaagagcgtgcaccgcgtgaagaa
cgcgccccacgcgaagagcgtcagcgccagccgcgcgaagaccgccgtggcaaccgtgaa
gagcgcgtgcgcgaactgcgtgagcccctggatgccgcaccggccccggccgcccgcgaa
gaacgcgccccgcgtgaagagcgtgcgccacgtgaggaacgtgtagcccgtgaagagcgt
gcaccacgtgaagaacgtgcccctcgcgaagagcgcgcaccacgtgaagaacgtgcaccg
cgtgaagaacgcgcaccacgtgaagagcgtgcaccgcgtgaagaacgcgcccctcgtgaa
gagcgtgcgccacgtgaagaacgcgctccgcgcgaagagcgccagctgcgccctgaggcg
caggccgtcgaacaggccgccgagctcgccgaagagcaactgccgaacgacgagctgctg
caggacgagcaggaaggcaccgatggcgagcgtccgcgccgccgctcccgtggccagcgt
cgtcgcagcaaccgtcgtgaacgccagcgcaacgccaatggcgagctgatcgaaggcgac
gaagacgccggcgaagagcagcagccacaacagcaccaggccaccgagctgggcgctgaa
ctggccgccggcactgccgtcatcgccgccgttgccaccagcaacatcagcgccgatgcc
gaagcccaagccaaccagcaggccgagcgcgccagcgccgctgtcgccgaaacccaggtg
gaaatcaccgaggtcgtggccgagcaggtcgccatcgccccggtggtcgagcaaccggtc
agcgagccagtggtcgccgtcgagccgagcatcgaaccggtggtcgaagtagcgccgcag
ccagtggtcgaagaagcccctgccgagcagcctgccgtcgtcgccgaggcgctgcaagcc
cctgccgtggaagccggtgaaatcgagcagccgcaggtagtcgaagccaccgtggtcgaa
gccccggtagccgagcagcctgtagcggtcgtcgagccagtggtcgaggcccagccggaa
gtgactgaagcacctgccgccgagcctgcgccggtcgttgccgagcaggcgcccgaggaa
gcaccggccccggtcgaagcgccttcggcgatgctggccaacggccgcgccccgaacgac
ccacgtgaagtgcgtcgccgcaagcgcgaagccgaagctgcagccgccgctgccgcccag
gccgctgccgaagccgcccctgcgcaagcgctggaaaccgccgatgagcacaagcctcat
cacggttga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (14)   

Download RDF
DBGET integrated database retrieval system