KEGG   Pasteurella multocida ATCC 43137: DR93_645
Entry
DR93_645          CDS       T03322                                 
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
pmul  Pasteurella multocida ATCC 43137
Pathway
pmul03030  DNA replication
pmul03410  Base excision repair
pmul03420  Nucleotide excision repair
pmul03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pmul00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    DR93_645 (ligA)
   03410 Base excision repair
    DR93_645 (ligA)
   03420 Nucleotide excision repair
    DR93_645 (ligA)
   03430 Mismatch repair
    DR93_645 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pmul03032]
    DR93_645 (ligA)
   03400 DNA repair and recombination proteins [BR:pmul03400]
    DR93_645 (ligA)
Enzymes [BR:pmul01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     DR93_645 (ligA)
DNA replication proteins [BR:pmul03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     DR93_645 (ligA)
DNA repair and recombination proteins [BR:pmul03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     DR93_645 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     DR93_645 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     DR93_645 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      DR93_645 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD HHH PTCB-BRCT DZR_2 5_3_exonuc GFRP
Other DBs
NCBI-ProteinID: AIN48525
Position
653833..655854
AA seq 673 aa
MTDSIKLEIEQLRQTLRYHEYQYHVLDNPQIPDAEYDRLFHRLKTLEQQYPQWFSSDSPT
QRVGAKPLSAFAQVQHEMPMLSLDNAFSDEELHAFVKRIQDRLVFSPKLLEFCCEPKLDG
LAVSILYVDGKLTQAATRGDGSTGEDITLNIRTVRNIPLQLLMENPPTRLEVRGEVFMSQ
AGFEALNEKALARGEKTFANPRNAAAGSLRQLDPRITSQRPLLLNAYSIGVAEGIDLPDT
HFERLQWLKSIGIPVNNEIQLCEGTENVLNFYRAIMQKRSTLGYDIDGTVIKVNDIALQE
ELGFISKAPRWAIAYKFPAQEELTVLNAVEFQVGRTGAITPVAKLQPVFVAGVTVSNATL
HNGDEIARLDVAIGDTVIIRRAGDVIPQIIGVLHEKRPANAEKIVFPTECPVCGSVIVRI
EGEAVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGAKLIEQLVDREQIHTPADLFKLD
LNTLARLERMGLKSAQNALDSLQKAKKTTLARFIFALGIREVGEATALNLANHFKTLEAL
KEATLEQLQEVQDVGEVVANRIFVFWREPHNVAVVDDLIAQGIHWETVEVKDVGDNPFKE
KTVVLTGTLTQMGRTEAKALLQQLGAKVSGSVSAKTDLVVAGDSAGSKLTKANELGVKVI
DENTFLAWSKPYL
NT seq 2022 nt   +upstreamnt  +downstreamnt
atgacagacagtattaaattagaaatagaacaattacgccaaacgctacgttatcatgaa
tatcaatatcatgtcttagataatccacaaattcctgatgcggaatacgatcgtttattt
catcgtttaaaaacgctggaacaacaatatccacaatggtttagctcggactctcctaca
caacgagtgggcgcgaaacccctttctgcgtttgcgcaagtgcaacatgaaatgcctatg
ctgtccttggataatgcattttcagatgaagagttgcatgcttttgtcaaacgtattcaa
gaccgtctggttttttcccctaaattacttgaattttgttgcgaaccgaaattagatggg
ttggcggtcagtattttgtatgtagatggaaaattgacacaagcagcgacccgtggtgat
gggagtacaggagaagacattacgttaaatattcgcacagtacgtaatatccctttgcaa
ttgttaatggaaaatccaccgacgcgtttggaagtacgtggagaagtctttatgtcgcaa
gcgggctttgaggcattaaatgaaaaagcgttagccagaggggagaagacctttgccaat
ccacgtaatgcggcagcgggatcattgcgtcagttagatccgcgaattactagccaacgt
ccgttgctattaaacgcgtatagcattggtgtcgcagaggggattgatttacctgatacc
cattttgaacgcttacaatggttaaaatccattggtattccggtgaataatgagattcag
ttatgtgaagggacggaaaatgtgctcaatttctaccgcgcgattatgcaaaaacggagc
actttgggctatgacattgatgggacagtgattaaagtcaacgatattgctttacaagag
gaattaggttttatttcgaaagcgcctcgttgggcaattgcctataaattccccgcacaa
gaagaattgacagtattaaatgcggtagagtttcaagtagggagaaccggtgcaattaca
ccagtcgcgaagttacaacctgtgtttgtcgcaggcgtgacggtcagtaatgcgacactg
cataatggcgatgaaattgcacgtttggatgtggcaattggtgatacggtgattattcgc
cgcgcgggagatgtgattccacaaattattggtgtgttacatgaaaaacgcccagccaat
gcagagaagatcgtttttccgacagaatgtccagtttgcggttcggtgattgtacgtatt
gaaggtgaggccgttgcccgttgtacgggcggtttattctgtgcggcacaacgtaaagaa
gcattgaaacatttcgtctcacgtaaagccatggatattgatggtgttggggcaaaactt
attgaacagttggtggacagagaacaaattcataccccagcggatttatttaaattggat
ctcaacacgttggctcgtttagagcgtatggggcttaaatctgcgcaaaatgccctcgac
agtttacagaaagcgaaaaaaacgactttagcgcgttttatttttgcgctaggtattcgg
gaagtgggcgaggccaccgcactcaacttagccaatcattttaagactttagaggcatta
aaagaagcgacgctggagcaactacaagaagtacaagatgtgggcgaagtggtcgctaat
cggatttttgtgttctggcgtgaaccgcataatgtggcagtagtcgatgatctgattgcg
cagggcatccattgggaaaccgtagaagtcaaagatgttggagataacccatttaaagag
aaaacagtggtgttaactggcaccttaacgcaaatggggcggactgaagcgaaagcctta
ctccagcagttaggagcaaaagtcagtggcagtgtttctgccaaaacggatctggtggtg
gcaggtgacagcgcaggttcaaaactgacaaaagccaatgagcttggcgtcaaagtgatt
gatgaaaacaccttcttggcgtggagcaaaccgtacttgtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (11)   
   Pfam (11)   
All databases (30)   

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