KEGG T03196: 103319697

Prunus mume (Japanese apricot): 103319697

Entry

103319697         CDS       T03196

Name

(RefSeq) LOW QUALITY PROTEIN: enhancer of mRNA-decapping protein 4

K12616

enhancer of mRNA-decapping protein 4

Organism

pmum Prunus mume (Japanese apricot)

Pathway

pmum03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:pmum00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103319697
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pmum03019]
    103319697
Messenger RNA biogenesis [BR:pmum03019]
Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     103319697
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     103319697

SSDB

Motif

Pfam:

Ge1_WD40 EDC4_C WD40 DUF4449

Other DBs

NCBI-GeneID:

103319697

NCBI-ProteinID:

XP_016650129

Position

LG1:2502562..2510280

AA seq 1403 aa
MASSGNPNPPPQQQPQPFDMQKFFKPTNPTPLSPQSQTQNNSNQNPNPNLSSSSFPIPPA
SFPPPSGPYSYPPQTAPFHHHQFQYHPHPQPHPHSNHPQIPYSPQDHHLLHQRSLSFPTP
PLQPPSTYNIATAPSNPSNNNSSTSNSNPNSGARIMALLGAPSGNLELSAAQPELSVPPG
VLPKGRHLIGDNVVYDVDVRLQGEFQPQLEVTPITKYGSDPQLVLGRQIAVNKSYICYGL
KQGNIRVLNIHTALRSLFRAHTQRVTDMAFFAEDVHLLASVSVEGRLFVWKISEGPDEEG
TPQITGKVVIAIQIVGEGEAVHPRVCWHCHKQEVLVVGFGKRVLRIDTTKVVKGEVPSAD
EPLKCPVEKLIDGVQFVGKHDGEVTDLSMCQWMTTRLVSASMDGTIKIWEDRKAQPLLVL
RPYDGHPVYSATFVTAPHRPDHIILITVGPLNREVKIWSSASEEGWLLPSDAESWKCTQT
LELKSCAEPRVEEAFFNQVIALSQAGLLLLANAKKNAIYAVHLEFGPDPAATRMDYIAEF
TVTMPILSFTGTSISPHGEQIVQVYCVQTLAIQQYALELSKCLPPPLDNVGLEKSDSNIS
REPSGAEGFALDLSGSKPTEMLLANSNSALKQTIQDSSSEGAVSVRYPVNSSSVEATTSK
DITTSSTESRPVALASATSDSDVVFVASPPIPLSPRLSGKLSGLRSPTDGSDPGRTLNEH
GGDQQVNDYSVDRKLDSVRSNLSDVPAVDDDSRNIEQKVGQDDLSSVLNPPIMFKHPTHL
ITPSEILMAASSSEGTNPIDSKNEGEANIQDVIVNSDMGNAEVEVKVVGEARSTQNDEFG
SQGEPQNVVSENKEKFFCSQASDLGIEMARECCAISAETYTTDEARQVDDSSMTEPLAQS
NAGDEDQESAKDVSGPCTTPTVFQSHTPTTKVKKQKWKNSQASGQSSPSPNVLNSIDSNN
EPGGSSSPPSAEAAFPQIMAXHLTFVQLLTMQKELQKQMTMMVAVPVTKEGRRLEAALGR
SMEKAVKANNDALWARFQEENAKNEKLLRDRNQQITSLINNFMNKDFPVMLEKMVKKELA
VVGPAVARAITPAIEKAIPPAISDSFQRGVGDKAVNQLEKSVNSKLEATVSRQIQAQFQT
SGKQALQDALKSSMEASVVPAFEKSCKAMFEQVDATFQKGMLEHTNAAQQHFDSAHSPLA
LALREAISSASSVTQTLSGEVADGQRKLIALAAARTSSSAVNPLVTQLTNGPLGGLHEKV
EVPLDPTKELSRLVSERKYEEAFTGALQRSDVTIVSWLCSQVDLRGVLLLNPLPLSQGVL
LSLLQQLACDISNDTSRKVAWMTDVAAAINPVNQMIAVHVRPVFEQVYQILHHQHSLPTI
SSAEHTSIRLLMHVINSMLMACK

NT seq 4212 nt +upstreamnt +downstreamnt
atggcttcttctgggaatccaaatccaccgccccagcagcaaccccaacccttcgacatg
cagaaattctttaaacccacaaacccaacgccactctcgccccaatcccaaacccagaac
aattcaaaccaaaaccctaaccctaatttgagttcctcttcgttcccaatcccacccgcc
tctttccccccgccctctggcccttactcgtaccctccccagacggcaccgtttcaccac
caccaattccaataccaccctcaccctcagccccacccccacagtaaccatccccaaatc
ccttactctcctcaagaccaccacttgctccaccagaggtctctctcatttcccacgcca
cccctccaacccccctctacttacaacattgccacggccccttccaaccctagcaacaac
aacagtagcacctccaattcgaaccccaattcgggtgctcgaatcatggcgcttctcggc
gctccatctggcaatctagagttgtcggctgctcagcccgagttatccgtccccccaggg
gtcctccctaaaggcaggcatttgattggcgataatgtggtttacgatgtggatgttagg
ttgcagggtgagtttcagccacagcttgaagttacgccgattaccaagtatggttcagat
cctcagcttgtgctgggccgccaaattgctgttaataagtcgtacatatgctatggattg
aagcagggaaacattcgggttttgaatatacacactgcattgagatctttgtttcgagct
catacacagagggtcacagacatggctttctttgctgaggatgttcaccttttggctagt
gtgagtgtagaaggccggctttttgtatggaagatttctgaaggtccagatgaagaaggt
acaccacaaatcacaggaaaggttgttattgccattcaaatagttggagagggggaagct
gttcatccacgagtttgttggcactgtcataaacaagaggttttggtagttgggtttgga
aagcgtgttttaagaattgatactactaaagtcgtgaagggtgaagtcccttctgcagat
gagcctctcaagtgtcctgttgaaaagctgattgatggagtccaatttgttggtaaacat
gatggagaagtgactgatttgtcaatgtgccaatggatgaccactcgtctggtttctgct
tctatggatggaaccataaagatctgggaagatcgcaaggcacaaccgcttttagtattg
agaccctatgacggccatcctgtttattcagctacatttgtgacagctccccaccggcca
gatcatattatacttatcacagtggggccacttaatcgggaagtgaagatctggtcctcg
gcgagtgaagaaggctggctacttcccagtgatgctgaatcatggaaatgtacccagaca
ttagagctgaagagttgtgctgaaccccgagttgaggaggcattctttaatcaagtcata
gctttgtcacaggctggccttctcttacttgcaaatgctaagaagaatgctatttatgct
gtgcacttagaatttggtcctgatccagcagcaacacgcatggattatattgcagaattt
actgttaccatgcctattttgagttttactggaacaagtatttcacctcacggtgaacag
attgtccaggtttattgtgtccagacactagccattcagcagtatgctctggaattatcc
aaatgcttgcctccaccactggataatgtgggtttagaaaagtcagattccaatatttca
cgggaaccgtcaggggctgaaggatttgctttggatctatctggaagtaaacccacagag
atgctgctagctaattcaaattcagcacttaaacaaaccatacaagatagtagttctgag
ggtgcagtttccgtgaggtatcctgtaaactctagttctgttgaggcaaccacttcgaaa
gatattaccacttcaagtacagaatcaagacctgttgcattggcatcagctactagtgat
tcagatgttgtttttgttgcatcaccgcctattcccttgagtcctaggttgtctggtaaa
ctttctggtttaagaagtccaacagatggctctgacccgggtcgcacactcaatgagcat
ggtggagaccaacaagtcaatgattactcagttgacaggaaattggacagtgttcgttca
aacttgtcagatgtgcctgcagtggatgatgattcaagaaatattgagcagaaagttgga
caagatgatttatctagtgtgctcaatcctcctatcatgttcaagcatccaacccatctc
ataactccctctgagattttaatggctgcttcatcttctgaaggtactaatcctattgac
agcaagaatgaaggggaggcaaatatccaagatgtgattgttaacagtgatatgggtaat
gctgaggtggaggttaaagtagtgggtgaagcaagatctactcaaaatgatgaatttgga
tctcaaggagaacctcaaaatgttgtttcagaaaataaggaaaaattcttttgctcccag
gcatcagatcttggaattgagatggcccgagaatgctgtgcaatatcagccgaaacatat
actacagatgaagctcggcaagttgatgattccagcatgacagaaccactggcccagtct
aatgctggagacgaagaccaggaatctgcaaaagatgtatctgggccatgtaccacccca
acagtttttcaatcgcatacaccaactacaaaagtgaaaaaacagaagtggaaaaactct
caagcatcaggtcaatcttccccatcaccaaatgtgctcaattcaatagattccaacaat
gaaccaggaggaagttcaagccccccctctgcagaagctgcatttcctcaaattatggcc
tgacatctaacatttgtacagctactgactatgcagaaagaactgcaaaagcagatgaca
atgatggttgcagtcccagttacgaaggaggggagaagattagaggcggctcttgggcgg
agtatggagaaggctgtaaaggccaataatgatgctttatgggctcgttttcaagaagag
aatgcaaagaatgagaagttattgcgagaccgtaatcagcaaataactagcttgatcaat
aacttcatgaacaaggactttccagtcatgttagagaaaatggtgaagaaggaattggcg
gtcgttggaccagctgttgctcgtgctataactccagctattgagaaagcaatacctcca
gctatttctgattccttccagagaggagttggtgataaggcagttaatcaattggaaaaa
tcggttaactcaaaacttgaagcaactgtttccaggcaaatacaggcgcagttccaaact
tctggcaaacaagctcttcaggatgctcttaagtctagtatggaagcttcagtggtacct
gcatttgagaagtcatgtaaggcaatgtttgagcaagtagatgctacgttccagaaagga
atgttagaacatacaaatgcggcacaacaacactttgattctgcacattcgccactggca
cttgctttaagggaagctattagttctgcatcatcggtgactcaaaccttaagtggagaa
gtggctgatggtcaacgtaagctaatagctcttgcagctgcacgaacaagctcaagtgca
gtaaatcccctggtcacacaactaaccaatggacctttgggtggtctccatgagaaggtt
gaggtgcctttggatccaacaaaggagctgtctaggttggtttctgaacggaagtatgag
gaggctttcactggagctctacaaagaagtgatgtgaccatcgtatcgtggttgtgctct
caggttgatctgcgtggggtattgttgctgaatcctcttcctcttagccaaggggtgctt
ctctctcttttgcaacagctggcctgtgatatcagcaatgatacatcgagaaaagttgcg
tggatgaccgatgtggcggctgccataaacccagtaaaccaaatgattgcagtgcatgtg
cggcccgtcttcgagcaagtttatcagatactgcaccatcaacatagcttgcctacaatc
tcaagtgccgagcacacaagtattagacttctgatgcatgtcatcaactccatgctgatg
gcctgtaaatga

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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