KEGG   Prunus mume (Japanese apricot): 103323131
Entry
103323131         CDS       T03196                                 
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 9A
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
pmum  Prunus mume (Japanese apricot)
Pathway
pmum03020  RNA polymerase
pmum03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pmum00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    103323131
  09124 Replication and repair
   03420 Nucleotide excision repair
    103323131
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pmum03021]
    103323131
   03400 DNA repair and recombination proteins [BR:pmum03400]
    103323131
Transcription machinery [BR:pmum03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     103323131
DNA repair and recombination proteins [BR:pmum03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      103323131
SSDB
Motif
Pfam: TFIIS_C RNA_POL_M_15KD zinc_ribbon_4
Other DBs
NCBI-GeneID: 103323131
NCBI-ProteinID: XP_008223319
Position
LG2:32305133..32307569
AA seq 114 aa
MSTMKFCRECNNILYPKEDKDQKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQILQ
DVAADPTLPRTKAVRCSECKHGEAVFFQATARGEEGMTLFFVCCNPSCGHRWRD
NT seq 345 nt   +upstreamnt  +downstreamnt
atgagtaccatgaaattttgccgcgaatgcaacaatatcctgtacccaaaagaggacaag
gaccagaagatcctcctctatgcgtgccgcaactgcgatcaccaggaggttgctgacaac
aactgtgtctacagaaatgagatacaccatgctgttggggaacgcactcaaatattgcaa
gatgtagctgcagatccaactctccctcgaaccaaagcggtgcggtgttcagagtgcaag
catggagaagctgtcttctttcaggcaactgctagaggagaggagggtatgacattgttc
tttgtttgctgcaaccccagctgtggccataggtggagagactaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

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