KEGG   Prunus mume (Japanese apricot): 103336271
Entry
103336271         CDS       T03196                                 
Name
(RefSeq) polyadenylate-binding protein 3-like
  KO
K13126  polyadenylate-binding protein
Organism
pmum  Prunus mume (Japanese apricot)
Pathway
pmum03015  mRNA surveillance pathway
pmum03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pmum00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    103336271
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103336271
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pmum03019]
    103336271
   03041 Spliceosome [BR:pmum03041]
    103336271
Messenger RNA biogenesis [BR:pmum03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     103336271
   mRNA cycle factors
    Stress granule specific factors
     103336271
Spliceosome [BR:pmum03041]
 Complex C
  Other components
   Complex C specific factors
    103336271
SSDB
Motif
Pfam: RRM_1 PABP RRM_occluded RRM_5 Nup35_RRM RRM_3 RRM_7 CITED DUF848
Other DBs
NCBI-GeneID: 103336271
NCBI-ProteinID: XP_016650511
Position
LG6:complement(17557237..17561318)
AA seq 666 aa
SAPAAQPVSPAAQQPPVAAPAPTPVGFGNVSLYVGDLDPTVNEAQLIDLFGQVGGVVSVR
VCRDQSRMQSLGYAYVNYSNTQEAANALEILNFAPINGKPIRIMYSHRDPSIRXXXXXXX
XXXXXXXXRANVFIKNLDKSIDNKALLDTFASFGTVLSCKVAVDGHGQSKGYGFVQYDKD
ESAQQAIKRLNSMLINGKQVYVGLFQRGQERNRPNGSPHFTNVYVKNLSETTTDDDLKKL
FAEHGNITSAVVMRDAAGKSRCFGFVNFEKPDAAAAAIDKLNGTTFSGDKVLFVGRAQRK
SEREAELRAKFEQERLSRFEKLQGANLYLKNLDDTITDEKLKELFSEFGTITSCKVMLDH
QGTSKGSGFVAFSTPEEANKALTEMNGKMLGRKPLYVAVAQRKEERKARLQARFAQIRAP
GGMTPLPSGIPGYHPGAPRLAPQQLYFGQGTPGLLPPQPAGYGFQQQLLPGMRPGVAPNF
IMPYHLQRQGQHGQRMGVRRGGNFQQVQQQQQQQQQLLHRNSNQGGLRYMGNARNGVDPS
VAPQGIVGPIMPLPFDGSGMPVTPNDSQRSGPLPMSTLASALASATPENQRLMLGEQLYP
LVERIEPEHTAKVTGMLLEMDQTEVLHLIESPDALKDKVAEAMDVLRKAATKSEVGDQLN
SLDLNE
NT seq 2001 nt   +upstreamnt  +downstreamnt
tcggcgccggcggcccaacccgtatccccggcggcgcaacagccacctgtggcggctccg
gccccgactccggtgggtttcggcaacgtgtcgttgtacgtgggcgatctggaccccact
gtcaacgaagcgcagctgatcgatctgttcggccaagtgggcggcgtcgtttcggttagg
gtttgtagggatcagagccgaatgcaatcgcttggctacgcctacgtcaattatagcaat
acgcaagaggctgctaatgccctggagattttgaatttcgctcccatcaatgggaaaccc
attaggattatgtattcccatcgtgatccaagtattcggannnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnngaagggcaaatgtctttatcaagaacctggacaaatct
attgataacaaggcgttgcttgacacttttgcttcctttggcactgtactttcttgcaag
gttgcagttgatggccatggtcaatcgaaagggtatggtttcgtacagtatgacaaggac
gaatctgcacagcaagcaatcaaacggctgaattcaatgctgataaatggtaaacaggtg
tatgttgggctgtttcaaagaggccaggaaaggaatcggccaaatggatcaccgcatttc
actaatgtttatgtgaagaatttgtctgagacaactacagatgacgacctcaagaaactt
tttgccgagcatggcaacataactagtgcagttgttatgagggatgctgctggaaagtct
cgatgttttggttttgttaacttcgagaagccagacgcagcagctgctgcaattgataag
ttgaatgggaccacctttagtggtgacaaggttttgtttgttgggagggctcaaaggaaa
tcagagagggaggcggagttgagagctaagtttgaacaggaaagactcagtagatttgag
aagctacaaggtgctaacttatatctgaaaaatcttgatgatacaataactgatgaaaaa
ctaaaggagctattttctgaatttggaacaataacatcatgcaaggtcatgcttgatcac
caagggacaagcaagggttctggatttgttgccttctctactccagaggaagccaataaa
gctttgactgaaatgaatggtaagatgcttggacggaagccactgtacgttgctgtagcc
caacgcaaagaagagagaaaggctcgattacaggcacgctttgcccaaatccgagcacca
ggtggaatgacaccattgccatcgggaattcctggatatcatcctggggcacctaggctt
gcccctcaacaactttattttggtcaaggtactcctggccttcttcccccacagcctgca
ggttatggcttccagcagcagctcttgcctggtatgcgcccaggtgttgctccaaacttt
attatgccataccaccttcagaggcaaggtcaacatgggcagcgaatgggggtacggcga
ggtgggaactttcagcaggtccagcagcagcagcagcagcagcagcagctactgcaccgt
aactccaaccaaggaggcttgagatacatgggtaatgcacggaatggagtggatccatct
gtcgctcctcaaggtattgtgggtccaataatgcctttgccctttgacggttcagggatg
cctgtgactcctaatgatagccagcgttctgggccgttgccgatgtcaacacttgcttca
gctttagcttctgctaccccagagaatcagcgcttgatgctgggtgagcagctatatcca
cttgttgagcgtattgagccggaacacactgctaaggtgaccgggatgttgctggagatg
gaccaaacggaggttctccatctcatcgagtctccggatgccttaaaggataaggtagct
gaggcaatggatgtccttcgtaaagctgcaacaaagtctgaagttggtgatcaacttaac
tcgttggatctcaacgagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (21)   

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