KEGG   Prunus mume (Japanese apricot): 103337481
Entry
103337481         CDS       T03196                                 
Name
(RefSeq) small RNA degrading nuclease 3
  KO
K14570  RNA exonuclease [EC:3.1.-.-]
Organism
pmum  Prunus mume (Japanese apricot)
Pathway
pmum03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:pmum00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    103337481
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:pmum03009]
    103337481
Ribosome biogenesis [BR:pmum03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    103337481
SSDB
Motif
Pfam: RNase_T DNA_pol_A_exo1 TMF_DNA_bd
Other DBs
NCBI-GeneID: 103337481
NCBI-ProteinID: XP_008238873
Position
LG1:19811424..19815572
AA seq 516 aa
MDAFIATAEKKVLVEIVKLSQKRGMKGNKGDWKQFLNIYDKKFGASLSDPGKRSNDVLTA
YLKTFDKEDDLKVLAKVVQCHSNRQAVDQLLKTFPENESPEQSLVRSTLEHPQYPLDYSF
PSHEQDWVVSKRGKKSKAMISNGMVAVDCEMVLCEDGSEALVKVCVVDENLQVKLDELVN
PRKKVADYRTEITGVSASDLDRVTCTLADIQKRLKKLLSGETILVGHSLCNDLQALKIDH
ARVIDTAYIFKYSDGPIFRKPSLNNLCKSVLGYEVRKPGSPHNCLDDACAAMKLVLAKIK
REIGDIIPPVQEDVREVNMAKLLLHRIPITVPSEELHNAIPGNYTIEVKQPSVKAQGDKY
SAFAIFKNPQEADQAYEKVQGNKEKDSSGRPQKLISFKLSKGVLTDLYLRKMAQDDSCAQ
VSSKRALEVEENSGVHKKQKTDQNIEEEMVADLSQCCDHLKEIERLKQEQQKVSEQCCDH
LKEIEGLKQQLKNKEFEISTLNKIVSKYQGGKKKGK
NT seq 1551 nt   +upstreamnt  +downstreamnt
atggatgcttttatcgccaccgcagagaaaaaggtccttgtggaaattgtgaagttgtcc
caaaagcggggaatgaagggtaataaaggagactggaagcagttcttaaatatttatgat
aagaagtttggggctagcttgagtgatcccggaaagaggtcaaatgatgtattgactgcg
tatttaaagacatttgataaagaggatgacttgaaggttttggctaaagttgtccaatgc
cattcaaatcgccaagcagttgatcaattgttaaagacttttccagaaaatgaatcccca
gagcagagtcttgtccgttcaactctcgaacacccacaatatccattggattattcattt
ccttcacatgaacaggactgggtagtttcaaagcgcggtaaaaagtccaaggcgatgatt
tcaaatggaatggttgctgttgattgtgagatggttctatgtgaagatggctctgaagct
ctagtaaaagtgtgtgttgttgatgaaaatttacaggtcaagctagatgaactagtaaac
cctcgtaaaaaagttgctgattacagaactgagattacaggagtttctgcatcagatttg
gatagagttacatgtacattggctgatatacagaaacgcttgaagaagttgttatcaggt
gaaactattttagtgggacacagtttgtgtaatgacctgcaagcattgaagatagaccat
gcaagggtgattgatactgcatatatctttaaatattcagatgggcctatttttagaaaa
ccttccttgaataatttgtgcaagtctgtattgggttatgaagtccggaagccaggttct
ccacacaattgtctagatgatgcttgtgctgcaatgaaacttgttcttgctaagataaag
cgtgaaattggcgatattatccccccagttcaggaggatgtacgtgaagttaatatggca
aagctacttctccacaggataccaatcacagtgcctagtgaagaattgcacaatgccatt
cctgggaactatacaatagaagtcaagcaaccttctgttaaagctcaaggagataaatat
tctgcctttgctatctttaagaatccacaagaagcagatcaagcatatgaaaaagtccaa
ggcaacaaggaaaaggactcatctgggcggccacagaagcttatttcatttaagctcagc
aagggtgtgttaactgatttatatcttcgtaaaatggcacaagatgattcctgtgcccaa
gtctcttctaagagagctctagaagttgaagagaactcaggtgtacataagaaacaaaag
acagatcagaatatagaagaggagatggtggcagacttaagtcagtgctgcgaccacctt
aaagagatagaaagattgaagcaagaacaacaaaaggtgtcagagcagtgttgtgatcat
ttaaaagagattgaaggattgaagcagcaacttaaaaataaggaatttgaaatctcgaca
ctgaataagattgtttccaaataccaagggggaaagaaaaaagggaagtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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