KEGG   Prunus mume (Japanese apricot): 103338448
Entry
103338448         CDS       T03196                                 
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like
  KO
K12813  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:3.6.4.13]
Organism
pmum  Prunus mume (Japanese apricot)
Pathway
pmum03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pmum00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103338448
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pmum03041]
    103338448
Spliceosome [BR:pmum03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    103338448
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    103338448
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_C HA2_N AAA_22 DEAD AAA_19 PWI T2SSE AAA_30 nSTAND3 SRP54 AAA_7 AAA_16 ABC_tran AAA_23
Other DBs
NCBI-GeneID: 103338448
NCBI-ProteinID: XP_008239870
Position
LG7:complement(14502127..14511855)
AA seq 1049 aa
MGSESNLKTWVSDKLMTFLGYSQPTVVQYIIGLTKQAKSSADVVGKLVEFGLSSSAETSA
FAEDIFARVPRKVSGLNLYQKQEREAAMLVKKQKTYSLLDADDQDDDDGDRSSAQVVSES
RKADSHKKRFRKKVLSQEDEDDEVIAQEEEERRVKRRISPDDDDGSESEEERLRDQRERE
QLEQNIRERDTAATRKLTDRKLTRKEEEEAIRRSNALERNDLEDLRKVSRQEYLKKREQK
KLEEIRDDIEDEQYLFDGVKLTEAEYRELSYKKQIYELVKKRSDEVEDTTEYRMPDAYDE
EGGVNQEKRFSVAVQRYRDLGAGDKMNPFAEQEAWEDHQIGKATLKFGSKNKKQISDEYQ
FVFEDQIDFIKASVMDGDEFDDDGQPSELLESKAKTALEKLQDDRKTLPIYTYRDQLLEA
VENHQVLVIVGETGSGKTTQIPQYLHEAGYTKRGKIGCTQPRRVAAMSVAARVSQEMGVK
LGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDIL
FGLVKDIARFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEIHYTKAPEADYL
DAAIVTALQIHVTQPPGDILVFLTGQEEIETAEEILKHRTRGLGTKIAELIICPIYANLP
TELQAKIFEATPDGARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGMESLLVT
PISKASAMQRAGRSGRTGPGKCFRLYTAYNYYNDLDDNTVPEVQRTNLANVVLTLKSLGI
HDLLHFDFMDPPPSEALLKALELLFALSALNKVGELTKVGRRMAEFPLDPMLSKMIVASD
KYKCSDEVISIAAMLSIGNSIFYRPKDKQVHADNARLNFHTGNVGDHIALLKVYNSWKET
NFSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIELVSNLSDYETIKKAITSGFFPHS
AKLQKNGSYRTVKHPQTVHIHPSSGLSQVLPRWVIYHELVLTTKEYMRQVTELKPEWLVE
IAPHYYQLKDVEDSMSKKMPRGEGRAQQD
NT seq 3150 nt   +upstreamnt  +downstreamnt
atggggagcgagagcaatctgaagacatgggtatccgataagttgatgacgtttctcgga
tattctcagcccactgttgttcagtacattattggattaaccaaacaagcaaaatcatcg
gctgatgttgtgggcaagcttgtagaatttgggttgtcctcttcggcagaaacaagtgca
tttgctgaagacatcttcgcaagagtgccccgtaaagtatctggtttgaatctatatcag
aaacaagagagggaagctgcgatgttggtgaagaagcagaagacatattctctcttggat
gcagatgaccaagatgacgatgatggcgatagatcttctgcccaggttgtttctgagtcc
aggaaagctgactcccataagaaacgattcaggaagaaggtcttgagtcaagaagatgaa
gatgatgaggtgattgcacaagaggaagaagagagacgagttaaaagacgaatttcccca
gatgacgatgatggttcagagtcagaagaagaaagattgcgtgatcaaagagagagggag
caattggagcagaatataagggaacgggatacagcagctacacgaaagttaacagataga
aaattaacacgaaaggaagaagaggaggctattcggagaagcaatgcattggagcggaat
gaccttgaagatttaagaaaagtttcaagacaagaatatctcaagaagagggagcaaaag
aaattggaggaaatcagagacgatatagaggatgagcaatacttatttgatggcgtgaag
ctcactgaagcagaatatcgcgaactaagttacaagaaacaaatatacgagctggtgaag
aagaggtcagatgaggttgaggataccactgagtacaggatgccagatgcgtacgatgag
gagggtggtgttaatcaggaaaagagattttctgtcgctgtgcaacgctacagagacctt
ggtgctggggataaaatgaacccatttgcagaacaggaagcttgggaggatcaccaaatt
ggaaaagcaacgctgaaatttggttcaaaaaacaagaaacaaatatctgatgagtatcaa
tttgtatttgaggatcagattgattttatcaaggcatcagtgatggatggtgatgagttt
gatgatgacgggcaaccctctgagttacttgagtcgaaggcaaaaacggccttagagaag
ctccaggatgacagaaaaacattacccatctacacctaccgtgatcaattgcttgaagct
gttgaaaatcatcaggttcttgttattgttggtgaaactggttctggaaaaactacacag
ataccccaatatcttcacgaggctggatacacaaagcgtggaaagattgggtgcacacag
ccacgacgagttgctgctatgagtgttgctgcaagggtttctcaagaaatgggggttaaa
cttgggcacgaggttggttattctattcgttttgaggattgcacatccgaaaagactgtt
ttgaaatatatgacagatggaatgctgttgcgagaattccttggtgaaccagatctggcg
agttacagtgtggtgatggtggacgaggcccatgaacgaacactctcgactgatattcta
tttggactagtaaaggacattgctcgatttagaccggatctcaaactgcttatctcaagt
gcaacgcttgatgctgagaagttcagtgattattttgattctgctccaattttcaaaatt
ccagggaggcggtatcctgttgaaatacattacacgaaagcaccagaggctgattactta
gatgcagcaattgtcactgcacttcaaatccatgtgacgcaaccacctggagatatattg
gtattcctcactggtcaggaagagattgaaacagcggaagaaatattgaagcacagaaca
aggggcctagggacaaaaattgctgagctgattatttgtcccatatatgcaaacctacct
actgagctgcaagcaaaaatttttgaagccacacctgatggggcaaggaaggttgtcctt
gccacaaatatagctgaaacttcgttgactattgatgggatcaaatatgttattgaccca
gggttttgcaagatgaagtcgtataacccaaggactggaatggagtcattgctagttact
cccatctcaaaggcatcagcaatgcagagggcaggtcgatctggtcgaacgggtcctgga
aagtgcttccggttatatactgcctacaattattacaatgatttagatgataacacagta
ccagaagtacaaagaactaatcttgcaaatgttgtgcttacgctgaagagccttggtatt
catgacttattacactttgattttatggaccctccgccatctgaagcattactaaaagcc
ctggaactgttatttgcactaagtgcattaaataaagtgggtgagttgactaaagtaggt
agaaggatggcggagtttccacttgatcccatgctatctaagatgatagttgcttctgat
aagtacaagtgttcagatgaagtcatttccattgctgccatgctttccattggtaattcc
atcttttaccgtcccaaggacaaacaagtccatgctgacaatgcacgtttgaattttcac
accgggaacgtgggagaccacattgcattgctcaaggtctataactcatggaaagagacc
aacttctcaacccagtggtgttatgaaaattatatacaggtgaggagcatgaagcgtgct
agagatattagggaccagcttgagggactcttggagagggttgagattgagctggtctca
aatctcagtgattacgagaccataaagaaggccattacatctggcttcttccctcattcc
gcaaagcttcaaaagaatggatcttatagaacagtcaaacatccacagactgtccatata
catcccagctcagggctgtcacaggtgcttccgagatgggttatataccatgaattggta
cttacaacaaaggaatatatgagacaggtaacagaattaaagccggagtggttagtggaa
atagctccgcattattaccagctgaaggatgttgaagattcgatgtcaaagaaaatgccc
cgtggagaagggcgcgcacaacaggattga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (16)   
   Pfam (16)   
All databases (27)   

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