KEGG   Pasteurella multocida subsp. multocida HN06: PMCN06_2035
Entry
PMCN06_2035       CDS       T01776                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
pmv  Pasteurella multocida subsp. multocida HN06
Pathway
pmv03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pmv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    PMCN06_2035 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pmv03021]
    PMCN06_2035 (rpoC)
   03400 DNA repair and recombination proteins [BR:pmv03400]
    PMCN06_2035 (rpoC)
Enzymes [BR:pmv01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     PMCN06_2035 (rpoC)
Transcription machinery [BR:pmv03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     PMCN06_2035 (rpoC)
DNA repair and recombination proteins [BR:pmv03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      PMCN06_2035 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C
Other DBs
NCBI-ProteinID: AFF25261
Position
2153544..2157797
AA seq 1417 aa
MKDLVKFLKAQSKTSEDFDVIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCA
RIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKS
LPSRIGLLLDMPLRDIERVLYFESYIVIEPGMTDLDKGQLLTEEQYIDAEDRWGDEFDAK
MGAEAIQALLRDMDLPQECENLREELQETNSETKRKKITKRLKLLEAFIQSGNKPEWMVM
TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLIAPDIIVRNEKRML
QESVDALLDNGRRGRAITGSNRRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP
YLHLHQCGLPKKMALELFRPFIYAKLESRGFASTIKAAKKMVEREDAIVWDILADVIREH
PILLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTLEAQLE
ARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDKVNGKGEGMLLQDPREAEKAYRT
GQVELHSRVKVRITEYVKNAVGEFEPQTNLVDTTIGRAILWMIAPKGMPFSLFNQTLGKK
AISKLINESYRRLGMKPSVLFADQIMYTGFAYAARSGSSVGIDDMVIPAKKYEIISAAED
EVAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTEEVINREGQPEKQASF
NSIFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVIIEDDCGTHEGIVMTPLIEGGDVKEALRDRV
LGRVVAEDVLKPGTEEVLIARNTLLDEKLCDVIDSNSVDSIKVRSVVTCNTDFGVCAKCY
GRDLARGHLINQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASAAAKESSIQVKNTGTLR
LANVKFVTNNEGKLVLTSRNTELTIIDAFGRTKEHYKVPYGAILSKGDGQEVTAGETVAN
WDPHTMPVVSEVSGFVKFIDLIDGLTVTRQTDELTGLSSIVVQDVGERATAGKDLRPAIK
LVDAKGNDILIPGTDVVAQYFLPGKAIVTLDDNAEVHIGEPLARIPQESVGTKDITGGLP
RVADLFEARKPKEPAILAEISGIVSFGKETKGKRRLLITPAEGETYEEMIPKWRQLNVFE
GEMVERGDLISDGAEPPHDILRLRGVHAVTEYIVNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGIVTKAYDSEFLEGEQVEVARVKIVNRKREAEGKPLVEFERELLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGFAYHQNRQKKVVMSDEMP
VKLSAADEEEIAAEFTVTAEDATASLAEMLNMADDAE
NT seq 4254 nt   +upstreamnt  +downstreamnt
gtgaaagacttagttaagtttttaaaagcacaatcaaaaacaagtgaagattttgatgtg
atcaaaattggtttagcctcaccggacatgatccgttcttggtcatttggtgaagttaaa
aaacctgaaaccattaactaccgcacctttaaaccagagcgtgacggtcttttctgtgca
cgtattttcggaccagtaaaagattacgaatgtttatgtggtaaatacaaacgcttaaaa
caccgtggtgtgatctgtgaaaaatgtggtgtggaagtcactcaaaccaaagtacgtcgt
gagcgtatgggtcacattgaacttgcctcacccgtggcgcacatttggttcttaaaatca
ctgccgtcccgtatcggtttattacttgatatgccattacgtgatatcgaacgcgtttta
tatttcgaatcttatattgtgatcgagccgggaatgacggatctcgataaaggtcagtta
ttaaccgaagaacaatatatcgatgcggaagatcgttggggtgatgaatttgacgcgaaa
atgggggcggaagctatccaagccttattgcgcgatatggatttaccacaagaatgtgaa
aacttacgtgaagaattacaagaaacgaactcagaaaccaaacgtaagaaaatcaccaaa
cgtttaaaactgttagaagcctttattcaatctggtaacaagcctgaatggatggtaatg
accgtattaccggtattaccaccagatttacgtccgttagtaccacttgatggcggtcgt
tttgcgacctcagatttgaacgatctatatcgtcgtgtgattaaccgtaacaaccgttta
aaacgtcttttagacttaatcgcaccagatatcatcgtgcgtaacgaaaaacgtatgtta
caagaatcagtagatgcgttattagataacggtcgtcgtggtcgtgctattactggctct
aaccgtcgtccattaaaatcacttgcggatatgatcaaaggtaaacaaggtcgtttccgt
caaaacctattaggtaaacgtgttgactattcaggtcgttcagtaatcacggtaggacca
tatttgcacctacaccaatgtggtttaccgaaaaaaatggcattggaattattccgtccg
tttatctatgcaaaattagaaagccgtggcttcgcttcaactattaaagccgcgaagaaa
atggttgagcgtgaagatgcgatcgtatgggatatcttagcggacgtaattcgtgagcac
ccaattttattaaaccgtgcgccaacgttgcaccgtttgggtatccaagcctttgaacct
ttattgatcgaaggtaaagcgatccagttacacccacttgtttgtgcggcgttcaacgcg
gacttcgacggtgaccaaatggcggttcacgtgccattgacattagaagcacagttagaa
gcgcgtgcattaatgatgtcaaccaacaacattttatcacctgcaaacggtgagccgatt
atcgttccttcacaagacgtggtattaggtctttactatatgacccgtgataaagtgaac
ggtaaaggtgaaggcatgttgttacaagacccacgtgaagcggaaaaagcgtatcgtacc
ggtcaagtcgaattacattctcgtgtcaaagtgcgtatcacagaatacgtgaaaaatgcg
gtaggcgagtttgagccacaaactaacttagtggatacgaccattggtcgtgcgattctt
tggatgatcgcaccaaaaggaatgccatttagcttgtttaaccaaaccttaggtaaaaaa
gcgatttctaagttaatcaacgagagctatcgtcgcttagggatgaaaccaagcgtcttg
tttgcggaccaaatcatgtacactggttttgcgtatgcggcacgttctggttcttctgta
ggtatcgatgacatggtcattcctgccaagaaatacgaaattatttctgcagcagaagac
gaagtagcggaaatccaagagcagttccaatcaggtttagtgacagcgggcgaacgttat
aacaaagtgatcgatatttgggcggcagcaaacgaacgtgttgctaaagccatgatggaa
aacctatcgactgaagaagtgatcaaccgtgaaggtcaaccagagaaacaagcctctttc
aacagcatctttatgatggcggactcgggtgctcgtggttctgcggcacagattcgtcag
ttagcgggtatgcgtggtttgatggcgcgtccagatggttcgatcattgaaaccccaatt
accgcaaacttccgtgaaggtctaaacgtattacagtactttatttcaacccacggtgcg
cgtaaaggtcttgcggatacggcattaaaaacagcgaactccggttacttaacccgtcgt
ttagtggacgtggcacaagatttagtgatcatcgaagatgactgtggtacacacgaaggt
atcgtgatgaccccattaatcgaaggtggtgatgtgaaagaagcactacgtgatcgtgta
ttaggtcgtgtggtggcagaagacgtgttgaaaccaggcacagaagaagtgttgattgca
cgcaataccttattagatgagaaattgtgtgatgtgatcgacagtaattctgtggatagc
atcaaagtgcgttccgttgtaacctgtaacacagacttcggtgtgtgtgctaaatgttat
ggacgtgatcttgcacgtggtcacttaatcaaccaaggtgaagccgtgggtgttattgcg
gcacaatctatcggtgaaccgggtacacagttaacgatgcgtacgttccatatcggtggt
gcggcatctgcagcagcgaaagaatccagtatccaagtgaaaaacacgggtaccttacgt
ttagccaacgtgaaatttgtcaccaataacgaaggtaagttagtgttaacatcacgtaac
accgaattaaccattattgatgcctttggtcgtacaaaagagcactataaagtgccttac
ggtgcgattttaagcaaaggtgatgggcaagaggtgacagccggtgaaaccgtagcaaac
tgggatccacatactatgccagtggtgtctgaggtaagtggttttgtgaaattcattgac
cttattgacggtttaaccgtgacacgtcaaactgatgagttgactggtttatcttctatc
gtggtacaagatgtgggtgaacgtgcgacagcaggtaaagacttacgtccagctatcaaa
ttagtggatgcgaaaggtaatgatatcttaattccagggacagacgtggtagcacagtac
ttcttaccaggtaaagcgatcgtgaccttagacgacaatgcggaagtccatatcggtgaa
ccattagcacgtattccacaagaatcggtaggaacgaaagatattaccggtggtcttcca
cgcgtggcagacttatttgaagcacgtaaaccgaaagagccagccattttggcggaaatt
tcaggtatcgtgtccttcggtaaagaaaccaaaggtaaacgtcgcttattgatcaccccg
gctgaaggtgaaacttacgaagaaatgattccaaaatggcgtcagctcaacgtatttgaa
ggcgaaatggtggagcgtggtgacttgatctcggatggtgcagaacccccacatgatatc
ttacgcttacgtggcgttcacgcagtcacagaatatatcgttaacgaagtacaagaagtt
taccgcttacaaggggtaaaaattaacgataaacacatcgaagtgattgttcgtcaaatg
ttacgtaaaggtattgtcacgaaagcttatgactctgaattcttagagggtgagcaagtt
gaagtggcacgcgtgaaaattgtgaaccgtaagcgtgaagcagaaggtaaaccattagtt
gaatttgaacgtgaattgcttggtattaccaaagcgtctcttgcaactgagtcatttatc
tcagcagcgtcgttccaagaaaccacacgtgtgttaaccgaagccgcagtggcaggtaaa
cgtgatgaattacgtggcttgaaagagaacgtaattgtgggtcgtttaatcccagcgggt
accggttttgcttaccaccaaaatcgtcagaagaaagtggtgatgagtgatgaaatgcca
gtgaaattatctgccgcagatgaagaagaaatcgcagcagaatttacggtgactgcagaa
gacgctacagcaagtttagcagaaatgttaaatatggctgatgatgcagaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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