KEGG   Pseudomonas mendocina ymp: Pmen_0004
Entry
Pmen_0004         CDS       T00510                                 
Name
(GenBank) DNA gyrase subunit B
  KO
K02470  DNA gyrase subunit B [EC:5.6.2.2]
Organism
pmy  Pseudomonas mendocina ymp
Brite
KEGG Orthology (KO) [BR:pmy00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pmy03032]
    Pmen_0004
   03400 DNA repair and recombination proteins [BR:pmy03400]
    Pmen_0004
Enzymes [BR:pmy01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     Pmen_0004
DNA replication proteins [BR:pmy03032]
 Prokaryotic type
  DNA Topoisomerases
   Pmen_0004
DNA repair and recombination proteins [BR:pmy03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      Pmen_0004
SSDB
Motif
Pfam: DNA_gyraseB GyrB_insert DNA_gyraseB_C Toprim HATPase_c GyrB_hook HATPase_c_3
Other DBs
NCBI-ProteinID: ABP82779
UniProt: A4XN63
Position
3820..6240
AA seq 806 aa
MSENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGYCSE
IVITIHPDESISVRDNGRGIPVDIHKEEGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGV
GVSVVNALSEELRLTIRRAGKVWEQIYHHGVPQAPLATVGDTDGTGTEIHFKASAETFSN
IHFSWDILAKRLRELSFLNSGVGILLRDERSGKEELFKYEGGLKAFVEYLNTNKNVVNQV
FHFNIQREEDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRHLNNYIE
QEGLAKKFKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFA
DFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALS
ELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMLSSAEVGTLITALGCGI
GREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYVYIAQPPLYKVK
KGKQEQYIKDDEAMDEYMTQSALEDASLHVNENAPGLSGGALEKLVGEYRGVMKTLDRLS
RVYPKEITEHFVYLPRIGLEQLADHAGMQAWLEQFSARLKTMEKSGQTYTASLREDRERH
VWLPEVEVKAHGLSSYTTFNRDFFASNDYKTVTALGDQLNNLLEDSAYVQRGERKKPVAT
FKEALDWLMAESTKRHSIQRYKGLGEMNPDQLWETTMDPEVRRMLKVTIEDAIAADQIFN
TLMGDAVEPRRDFIESNALAVSNLDF
NT seq 2421 nt   +upstreamnt  +downstreamnt
atgagcgagaatcaaacgtacgactcctccagcatcaaggtgctgaaaggactggacgcc
gtacgcaaacgtcccgggatgtacatcggtgacactgacgatggcagtggtctgcaccac
atggtgttcgaggtggtcgataactccatcgacgaagcgctggccggctattgcagcgag
atcgtcatcaccattcaccctgacgaatcgatcagcgtacgtgacaacggtcgcggcatt
ccggtggacatccacaaggaagaaggcgtttccgcggccgaggtcatcatgaccgtgctg
cacgccggcggtaagttcgatgacaacacctacaaggtgtccggcggtctgcacggcgtg
ggtgtatcggtggtgaacgcgctgtccgaagagctgcgcctgaccatccgccgcgctggc
aaggtgtgggagcagatctatcaccacggcgtgccgcaagcgccgctggctactgtcggc
gacaccgatggcactggtaccgagattcacttcaaggcatctgccgagaccttcagcaac
atccatttcagctgggatatcctggccaagcgcctgcgcgagctgtcgttcctcaactcc
ggcgtgggcatcctgctgcgtgacgagcgttccggcaaggaagagctgttcaagtacgaa
ggcggtctgaaggccttcgtcgagtacctcaacaccaacaagaacgtggtgaaccaggta
ttccacttcaacatccagcgcgaggaagatggtgttggcgtggaagtggccctgcagtgg
aacgacagcttcaacgagaacatcctctgcttcaccaacaacattccgcagcgtgacggt
ggtacccacctggcaggcttccgctctgccctcacccgccacctgaacaactacatcgag
caggaaggtctggcgaagaagttcaaggtcgccaccactggcgatgacgcccgtgaaggc
ctgaccgcaatcatctcggtcaaggtgccggacccgaaattcagctcgcagaccaaggac
aagctggtttccagcgaggtgaaaaccgctgtcgagcaggagatgggcaagtactttgcc
gacttcctgctggagaatcccaacgaagccaaggccgtggtcggcaagatgatcgacgcc
gcccgtgcccgtgaagcggcgcggaaggcgcgtgaaatgacccgccgcaagggcgctctg
gacattgccggtctgcccggcaaactggccgactgtcaggaaaaagacccggcgctgtcc
gaactctacatcgtggagggtgactccgcgggcggttctgccaagcagggccgtaaccgc
aagacccaggcgatcctgccgctcaagggcaagatcctcaacgtcgagaaggcgcgcttc
gacaagatgctctcctctgccgaagtcggtaccctgatcaccgcactgggctgcggtatc
ggacgcgaggagtacaacatcgacaagctgcgctaccacaacatcatcatcatgaccgat
gctgacgttgacggttcgcacatccgtactctgctgctgaccttcttcttccgtcagctg
ccggagctgatcgagcgtggctacgtctacatcgcccagccgccgctgtacaaggtcaag
aagggcaagcaggagcagtacatcaaggacgacgaggccatggacgaatacatgacccag
tcggccctggaagacgccagcctgcacgtcaacgagaacgctcctggcctgtccggcggt
gctctggagaagctggttggtgaataccgcggcgtgatgaagaccctggaccgcctgtcg
cgcgtgtatccgaaggaaatcaccgagcacttcgtctacctgccgcgcatcggccttgaa
cagctagctgatcatgccggcatgcaggcctggctggagcagttcagcgcccgtctgaag
acgatggaaaagtccggccagacctacactgccagcctgcgcgaagaccgcgagcgccat
gtctggctgcctgaggtagaggtcaaggcgcatggtctgtccagctacaccaccttcaac
cgcgacttcttcgccagcaatgactacaagacagtcacggccctgggcgaccagctgaac
aacctgctggaagacagcgcctacgtacagcgcggcgaacgcaagaagccggtggcgacc
ttcaaggaagcgctggactggctgatggccgagagcaccaagcgccacagtatccagcgc
tataagggtctcggcgaaatgaacccggatcagctgtgggaaaccaccatggatccggaa
gtgcgacgcatgctcaaggtgaccatcgaagacgccatcgcggcggaccagatcttcaac
accctgatgggcgacgccgtggagccgcgccgcgacttcatcgagtccaatgccctggcg
gtgtcgaatctggacttctga

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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