KEGG   Pseudomonas mendocina ymp: Pmen_1982
Entry
Pmen_1982         CDS       T00510                                 
Name
(GenBank) integration host factor, alpha subunit
  KO
K04764  integration host factor subunit alpha
Organism
pmy  Pseudomonas mendocina ymp
Brite
KEGG Orthology (KO) [BR:pmy00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pmy03032]
    Pmen_1982
   03036 Chromosome and associated proteins [BR:pmy03036]
    Pmen_1982
   03400 DNA repair and recombination proteins [BR:pmy03400]
    Pmen_1982
DNA replication proteins [BR:pmy03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    Pmen_1982
Chromosome and associated proteins [BR:pmy03036]
 Prokaryotic type
  Nucleoid associated proteins
   IHF (integration host factor)
    Pmen_1982
DNA repair and recombination proteins [BR:pmy03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Facilitator
      Pmen_1982
SSDB
Motif
Pfam: Bac_DNA_binding HU-HIG HU-CCDC81_bac_2 Meth_synt_1
Other DBs
NCBI-ProteinID: ABP84743
UniProt: A4XTS7
Position
2182060..2182362
AA seq 100 aa
MGALTKAEMAERLYEELGLNKREAKELVELFFEEIRQALELNEQVKLSGFGNFDLRDKRQ
RPGRNPKTGEEIPITARRVVTFRPGQKLKARVEAYAGTKS
NT seq 303 nt   +upstreamnt  +downstreamnt
atgggggctctgacgaaagctgaaatggcggaacgtctgtatgaagagctcggcctgaac
aaaagggaagccaaggaactggtggagctgttttttgaagagatccgccaggctcttgag
ctgaacgaacaggtcaagctttccgggttcggtaacttcgacttgcgcgacaagcgccag
cgacccggccgtaacccgaaaacaggagaggagattccgatcacggctcgccgtgtggtc
acctttcgtccagggcaaaaattgaaagccagggtcgaggcctatgctggaaccaagtca
taa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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