KEGG T00459: Pnap

Polaromonas naphthalenivorans: Pnap_0498

Entry

Pnap_0498         CDS       T00459

Name

(GenBank) protein of unknown function UPF0027

K14415

tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]

Organism

pna Polaromonas naphthalenivorans

Brite

KEGG Orthology (KO) [BR:pna00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:pna03016]
    Pnap_0498
Enzymes [BR:pna01000]
6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     Pnap_0498
Transfer RNA biogenesis [BR:pna03016]
Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    Pnap_0498
Prokaryotic type
   tRNA splicing ligases
    Pnap_0498

SSDB

Motif

Pfam:

RtcB

Other DBs

NCBI-ProteinID:

ABM35819

UniProt:

A1VJJ1

Position

526614..527906

AA seq 430 aa
MQCLSRRAPTTAPGKPTRKQKMNYEMHQVEGGVPVKMWTQGVPVEAVALRQLENTARLPI
VFSHVAAMPDVHYGIGATVGSVVATFKAIIPASVGVDIGCGMIACKTTLRAEDLPDSLAQ
LRSEIEKAVPHGMTPKEQRRGGSRDRGSWENPPNEADAAWAQLVDEFEAICLDYPRLKNT
NNHRHMGTLGGGNHFIEVCLDEAGAVWIMLHSGSRGVGNAIGTHFIELARKDAELHQRNL
PDKDLAYFEEGAQYFGDYVRGVGWAQKFAKLNREVMMQRTIAALRKVVKKPFETHIEAVN
CHHNYVARETHFGQDVFVTRKGAVSARAGELGIIPGSMGARSFIVRGKGNPESFMSCSHG
AGRSMSRTRAKKLFTLADQIKATEGVECRKDEAVIDEIPMAYKDIDAVMAAQTDLVEVVY
ILKQIVCVKG

NT seq 1293 nt +upstreamnt +downstreamnt
atgcaatgtctatcacgtcgggcgccaacaacggcgcccggcaagccaacaagaaagcaa
aaaatgaattacgaaatgcatcaggtcgaaggcggcgtgcccgtcaaaatgtggacgcag
ggggttcccgtcgaggcggtggcgctcaggcagctcgaaaacacggcccggctgccgatt
gtcttcagccatgtcgcggccatgcccgatgtgcattacggcatcggcgcaacggtgggc
agcgtggtcgccaccttcaaggccatcattccggcgtcggtcggcgtcgatatcggctgc
gggatgatcgcctgcaagaccacgctgcgcgccgaagacctgcccgacagcctggcgcag
ctgcgcagcgagatcgaaaaagccgttccccacggcatgacgcccaaggagcagcgccgt
ggcggcagccgtgaccggggttcctgggaaaacccgccgaacgaggccgacgccgcctgg
gcgcagctggtggacgagttcgaggcgatttgcctggactacccgcgcctgaaaaacacc
aacaaccaccgccacatgggaacgctgggcggcggcaaccacttcatcgaggtctgcctg
gatgaggccggagcggtctggatcatgctgcactcgggctcgcgtggggttggcaatgcc
atcggcacgcacttcatcgagctggccaggaaggacgcggaactgcaccagcgcaacctg
cccgacaaggatctggcctattttgaagaaggtgcgcagtatttcggcgactatgtgcgc
ggcgtgggctgggcgcagaaattcgccaagctcaaccgcgaagtgatgatgcagcgcacg
attgccgcgctgcgcaaagtcgtcaagaagccgttcgagacgcacatcgaggcggtgaac
tgccaccacaactatgtcgccagggaaacccattttgggcaggacgtgttcgtgacccgc
aaaggagccgtgagcgccagggcgggcgaactgggcatcattccgggcagcatgggggcg
cgcagcttcattgtgcgcggcaaggggaatcccgagagcttcatgagctgcagccatggt
gccggacgctcgatgagccggacccgggccaaaaagctgttcacgctggccgaccagatc
aaggccactgaaggcgtggaatgccgcaaggacgaggcggtgattgacgaaattccgatg
gcctacaaggacatcgacgcggtcatggccgcgcagaccgatctggtggaggtggtgtac
atcctcaagcagatcgtctgcgtcaagggctga

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (10)   

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