KEGG   Candidatus Protochlamydia naegleriophila: PNK_1018
Entry
PNK_1018          CDS       T04212                                 
Symbol
dbp2
Name
(GenBank) hypothetical protein
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
pnl  Candidatus Protochlamydia naegleriophila
Pathway
pnl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pnl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PNK_1018 (dbp2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pnl03019]
    PNK_1018 (dbp2)
   03009 Ribosome biogenesis [BR:pnl03009]
    PNK_1018 (dbp2)
Messenger RNA biogenesis [BR:pnl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     PNK_1018 (dbp2)
Ribosome biogenesis [BR:pnl03009]
 Prokaryotic type
  rRNA helicases
   PNK_1018 (dbp2)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_30 AAA_19 Helicase_RecD UvrD-helicase SecA_DEAD AAA_22
Other DBs
NCBI-ProteinID: CUI16641
UniProt: A0A0U5ER78
Position
cPNK:1233105..1234676
AA seq 523 aa
MTPENQSPVEEFNFDQFGLKEPIVQALHEAGFKTPSPIQKQAIPAVLAGHDMVAQAHTGT
GKTAAFGLPALHLISEKPGTQLLVLTPTRELASQVSDELFRLGRHLGIRTATICGGKSFR
PQIEALQRGVQVLVATPGRLLDLLESDSLTDFRPAIVVLDEADEMLDMGFLEAIQKIFTF
LPAKRQTLLFSATMPPQIQRLAQQILKSPLFISVTQKETTNKDIKQVYYVIREEERDDAI
LRLLDSEEPSKAIIFCRTKKDVDRLSTLLVASGYHARGLHGDMEQPQREEVIRHFRAEQI
RVLVATDVAARGLSVSDVSHVFNYHLPFDPASYVHRIGRTGRAGNKGMASTFVTLREWRD
FQRYEKIIGAPIKRELIPNLEDVKKLKRQKLVDRIQGQAVHQDVSLVLELMVEMDHATMA
SKFISFVLDQETIQGPDNIGVEPRGQERETKGQRSDRFNDERRRANNNGPKKFSGKPGGF
KKDFDKGGYKKSGFPKNRSNAGNYSTRSGSGSAGGFKERARAV
NT seq 1572 nt   +upstreamnt  +downstreamnt
atgaccccagaaaatcaatcacctgttgaagaatttaattttgatcaatttggcttaaaa
gagccgattgtacaagcactgcatgaagccggatttaaaacgccgagcccgattcagaag
caagctattccagcagtattagctggacatgacatggttgcgcaagcccatacaggtact
ggaaaaacggcagcttttggccttccggctttgcatttgatcagcgaaaagccaggcaca
cagttgttagttttgactccgactcgtgagcttgcaagccaagtaagcgatgagcttttc
cgcctaggccgtcatttgggaattcgcactgctacgatttgcggtggaaaatcttttaga
ccacagattgaagccttgcagagaggagttcaggtactcgtagcgactcctggtcgtttg
ctcgatcttctagaatctgacagtttaacagactttagaccagcgattgttgttctagac
gaagccgatgaaatgctagacatgggctttttagaagccattcaaaagattttcactttc
ttgccagcaaaaagacaaacattgctattttcagcaacgatgcctccacagattcaacgt
ttggcacaacaaatcttgaagagcccattgtttatcagtgtgactcaaaaagagacaact
aacaaagacattaagcaagtttactatgtgattcgcgaagaagagcgcgatgatgcgatt
ctccgcttgctagatagcgaagaaccaagcaaggcgatcattttctgccgtacgaaaaaa
gatgtcgatcgtctttcaactttgctcgttgctagtggataccatgcgcgtggcttgcat
ggagacatggaacagcctcagcgtgaagaggtgattcgtcatttccgcgccgaacaaatt
cgcgtcttagtcgcaacagacgttgctgcaagaggattgagcgtatcggatgtgtctcac
gttttcaattatcacctaccattcgatcctgcgagctatgtacaccgtatcggccgtaca
ggaagagcaggtaacaaaggtatggcgagcacgtttgtgactttgcgtgaatggcgcgat
ttccaacgttatgaaaaaatcattggcgctccaattaagcgagaactcattccaaatctc
gaagatgtgaaaaagctaaaacgccagaaactggttgatcgcattcaaggtcaagctgtt
caccaggatgtttctttagtcttggaactgatggttgagatggatcatgcgactatggct
tctaagttcatctctttcgtattggatcaagaaacgattcaaggcccagataacatcggc
gtcgagccaagagggcaagaaagagaaacaaaaggacagcgttccgaccgttttaatgac
gagcgtcgcagagctaataataatggtccaaagaagttttctggtaagcctggtgggttt
aaaaaagactttgataaaggcggttataagaaatcaggctttccaaagaatcgctccaat
gctggcaactactcgactcgttcaggtagtggcagtgcaggcggatttaaagaacgcgcc
cgcgcagtctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (19)   

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