KEGG   Polaribacter vadi: LPB03_12855
Entry
LPB03_12855       CDS       T04504                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
pob  Polaribacter vadi
Pathway
pob03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pob00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LPB03_12855
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pob03019]
    LPB03_12855
Enzymes [BR:pob01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     LPB03_12855
Messenger RNA biogenesis [BR:pob03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     LPB03_12855
SSDB
Motif
Pfam: DEAD Helicase_C ResIII UTP25 Helicase_C_2
Other DBs
NCBI-ProteinID: AOW18283
UniProt: A0A1B8TTC5
Position
2968328..2969680
AA seq 450 aa
MTFKDLDLSNQLQYAIDDLGFENPTPIQEQAFSVVRSGKDVVGIAQTGTGKTFAYMLPIL
RDLKFSKQLHPRVLVLVPTRELVLQVVDEIEKLSKYINVRVLGVYGGANINTQKQAILQG
QDIIVATPGRLYDLGLSNALKLKSIQKLVIDEVDVMLDLGFRFQLMNIFEILPERRQNVL
FSATMTEDVDVLIDDFFKNPEKISVAVSGTPLDNIEQVSYNIPNFFTKVNLLHHLLSDKE
TYNKVLIFVGFKRTADYLFKQLEEVFNDEMCVIHSNKTQNYRIRSIKQFDEGKNRILLAT
DVMARGLDFDNVSHVINFDTPEFPENYMHRIGRTGRAEKVGKTILLSTEKEQESKLLIEA
LMDYEIPVLELPEEIEISKLLTEDERPKEDHEQSKNRTKVEYVPGAAFHEKSEKNSKTNQ
GGSYRREIAKKYKKPKTRGDKNYNKHNKKK
NT seq 1353 nt   +upstreamnt  +downstreamnt
atgacttttaaagatttagatttatcaaatcaactacaatatgctattgacgatttgggt
tttgaaaacccaacacccattcaagagcaagctttttctgtggttagatctggtaaagat
gttgtaggaattgcgcaaacaggaacagggaaaacttttgcgtacatgttgccaatttta
cgcgatttaaaattttctaaacagctacatccaagagttttggttttagtaccaactcgt
gaattggttttacaagttgtcgatgaaatagaaaaactatcaaaatatataaatgtgcgt
gttttaggtgtttatggaggagccaatatcaacactcaaaaacaagcaattttacaagga
caagatattattgtagcaactcctgggcgtttatacgatttaggtttaagcaatgctctg
aagttaaaatcaatccaaaaattggtgattgatgaagtagatgtcatgttagatttaggt
tttagatttcagttgatgaacatttttgagattcttccagaaagaagacaaaatgtgttg
ttttctgcaactatgactgaagatgtagatgttttaattgatgatttttttaagaatcca
gagaaaatttctgtagcagttagtggaacaccattggataatattgagcaagtttcttat
aatattcctaacttttttacgaaagtaaacttgttgcatcatcttttgagtgataaagaa
acctataataaagtactgatatttgttggttttaaaagaactgcagattatttatttaag
caattagaagaggtttttaatgatgaaatgtgtgtaatacattccaacaaaacgcaaaat
tatagaatacgatctattaagcagtttgatgaaggtaaaaacagaattttactggcaaca
gatgtgatggctcgtggtttagattttgataatgtaagtcatgttattaattttgataca
ccagagtttcctgaaaattatatgcacagaattggtagaactggtcgtgcagaaaaggtt
ggaaaaacaattttattatccacagaaaaagagcaagaatctaaactattaatagaggct
ttaatggattatgaaattccagttttggagttgccagaagaaatagaaatttctaaatta
cttactgaagatgagcgaccaaaagaggatcatgagcaatctaaaaatagaacaaaagta
gaatatgtgcctggagctgcttttcatgaaaagagcgaaaaaaacagtaaaacgaatcaa
ggaggttcttatagaagagaaattgctaagaaatataagaaaccaaaaactagaggggat
aaaaactacaataaacataataagaaaaaataa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (14)   

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