KEGG   Paenibacillus odorifer: PODO_24150
Entry
PODO_24150        CDS       T03326                                 
Name
(GenBank) single-stranded DNA exonuclease
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pod  Paenibacillus odorifer
Pathway
pod03410  Base excision repair
pod03430  Mismatch repair
pod03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:pod00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    PODO_24150
   03430 Mismatch repair
    PODO_24150
   03440 Homologous recombination
    PODO_24150
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pod03400]
    PODO_24150
DNA repair and recombination proteins [BR:pod03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     PODO_24150
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     PODO_24150
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      PODO_24150
SSDB
Motif
Pfam: RecJ_OB DHH ssDNA-exonuc_C DHHA1 DUF4347
Other DBs
NCBI-ProteinID: AIQ76099
Position
complement(5364254..5366656)
AA seq 800 aa
MLYSKTRWQSPAANPDTVRDMARSLSISPLLSSLLVNRGMNTPHEALSFMDGSEEEQHDP
FLLKGMAEAVPRIRKALKDEEHILIYGDYDADGVSSTALMIHLLRYLGASFDIYIPHRSN
EGYGLHNHALDWALQQGVSLIITVDTGISAYHQVAYANELGIDVIVTDHHEPPELLPEAY
TLINPKLPDCPYPFKGLAGVGVAYKLAQAILGEETPTEWAEIAAIGTVADLMPLLGENRE
IVRNGLESMRHSSFPGIRALLAVSGVNMSTVSAVNIAFGMAPRINASGRLDHAGRAVSLL
TTEHAAEAEQLAGELDLLNKERQLVVERIVVEATAKLEQMTQGGEIPDIIVLADHGWNVG
VVGIVASKLLERYYRPVIILDIHPETGMCKGSARSIPGLDIYAALSSCSDLMDHFGGHPA
AAGMSLHRDGLEAFAAALNEYASGVLTPEHFVPVASADAEVSISDLSLQTALELERLAPF
GMSNPLPKFIIRGATVKETRTMGQDGKHLKIVLQQGKNSIEALAFGKGALSRLLPAGTTI
NVLAELSINEWNGSRKSQLMLQDLSVQDAQLFDLRGAADAVRQAAHIRELLLPYSGAGPY
RAAAVFQNGRSTPASELIGMSLWVYDKEAGISAAVKDEPLQESGHVSLLCLLDMPETPEQ
LDALLETFPNADNIALLHSIKDGRERLITPTRDHFKILYKLLASITSVATPENEVLLRLS
RQSSLSIRMLNNMLDVFEELDFIKRSQGSVAFITQPVAKSLTASSHFVRLGQMAEMEQYF
MEGSLSELQDWMLSRRLGVS
NT seq 2403 nt   +upstreamnt  +downstreamnt
ttgctttattcaaaaacaagatggcaatctccggcagccaatcccgacacagttagggat
atggcccggagcctttctatttctccactcttatcctcactattagtaaatagaggaatg
aacacgcctcatgaagctctaagcttcatggatggcagtgaggaagaacagcatgatccg
ttcctactcaaaggaatggctgaagcggttcctagaattagaaaggctttaaaagatgaa
gaacatattcttatttatggcgattatgatgccgacggggtgtccagcacagcacttatg
attcatctgctgcgctatttaggcgcttcctttgatatttatatcccacaccgctctaat
gagggttatgggctgcataatcatgccctggattgggctttacagcaaggtgtctcctta
atcattacagtagatactggcattagcgcttatcatcaggttgcttacgctaatgaactg
gggatcgatgtgatcgttacggatcaccatgaaccccctgagcttttgccagaggcctat
acgcttattaatcccaagctgccagactgcccttatccgttcaaaggattagcgggtgta
ggtgtggcttataagcttgctcaggctattctaggggaagaaactcccacagaatgggca
gagattgcagcgataggaacggttgcggatttaatgccgctgcttggcgaaaaccgtgag
attgttagaaatggcttggaaagtatgcggcattcaagtttcccggggattcgtgcctta
ctcgctgtcagcggtgtgaacatgagcactgtgagtgcggtcaatatcgcttttggcatg
gcgccgcgcattaatgccagtggtcgcctggaccatgctggacgggctgtgtccctcctc
actaccgagcatgcggctgaggcagagcagctagctggagagctggacctgcttaacaaa
gaacgccaattggtggtagaaagaattgttgttgaggctactgccaagctggagcagatg
acacagggtggcgaaatcccagacatcattgttcttgctgatcatggctggaatgtaggt
gtggtaggtatagtggcttccaaactgctggagcgttattatcggcctgtgatcattctg
gatatacatccagagaccggaatgtgcaaaggttctgctcgctccattcctggacttgac
atctacgctgcactttcttcttgttctgatttaatggatcattttggaggtcatccagcc
gctgcgggaatgagcctgcatcgggatggattagaagcctttgctgcagcattaaacgaa
tatgcgtccggggtgttaacgccagagcatttcgttcctgttgcttccgctgatgcagag
gtgtcaatctcagatttatcactgcagaccgcgttagaattggaaaggcttgcaccattc
ggaatgtctaatccgttgccgaagtttattattcgtggggctaccgtgaaagagacacgt
acaatgggccaagatggaaaacacctgaagattgtattgcagcaggggaaaaacagcatt
gaagccttggcgtttggtaaaggcgctttatccaggctgctaccggcgggtactacgatc
aacgtgttagctgagctgtcgatcaatgaatggaatggctcacgcaaatcacagctgatg
ctgcaggatttatctgtgcaggatgctcagttattcgatcttcgtggtgctgctgacgcc
gtacggcaagccgcacatattagagaactacttcttccttatagtggtgcgggtccgtat
cgagctgctgcagtgtttcagaacggacgtagtacgcctgcaagtgaattgataggaatg
tctttatgggtatatgataaagaagctggcattagcgctgctgttaaggatgagcccctt
caggaatcagggcatgtctccctgttatgcttactggatatgccggagactcctgaacaa
ctggatgcgctgctcgaaaccttccctaatgctgataatattgcgttattgcattctatc
aaggatggccgagaacgacttattactccgacacgggatcatttcaaaatactatataaa
ctgttggcttcgatcacctcagttgcaacacctgagaacgaagttttgctgcggttaagc
cgccagtcctcgttaagtatccgcatgcttaacaacatgcttgatgtgtttgaggagctt
gattttattaaaagaagtcagggaagtgtggcgtttattactcagccagtagctaaaagt
ctgacagcatcgagtcattttgtccgactgggacagatggcggaaatggagcaatacttc
atggagggcagcctgtcagagttacaggactggatgttatcgcgtcgtttaggcgtatca
taa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (14)   

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