KEGG   Pontibacillus sp. HMF3514: GS400_02605
Entry
GS400_02605       CDS       T06374                                 
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
  KO
K03215  23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
Organism
pof  Pontibacillus sp. HMF3514
Brite
KEGG Orthology (KO) [BR:pof00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:pof03009]
    GS400_02605 (rlmD)
Enzymes [BR:pof01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     GS400_02605 (rlmD)
Ribosome biogenesis [BR:pof03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    GS400_02605 (rlmD)
SSDB
Motif
Pfam: tRNA_U5-meth_tr TRAM Methyltransf_31 Met_10 Methyltransf_25 MTS Methyltransf_15 Cons_hypoth95 PrmA Methyltransf_11 RrnaAD CMAS Methyltransf_32
Other DBs
NCBI-ProteinID: QHE50997
UniProt: A0A6P1HEN5
Position
492250..493623
AA seq 457 aa
MSKPQPPVQKNETVELTFEDLTHEGNGVGKVDGYPLFVPYGLPGEKGKVKVIKVKKNFGF
GKLLEVEEPSPERVEPPCDVFYQCGGCQIQHMSYDMQLNMKRNQVESSMHKVGHLGHVPV
HPTLGMENPWRYRNKVQIPVGKDGDGLKTGFYRKRSHDIINMDTCVIQDEKNDRMVEAVR
RIAEKHGIQAYDEEKHRGTLRHIMVRTGQTTGDVMVVMITKTKELPHKDEIVEEIRQTYP
DVKSIVHNVNPKRTNVVMGDQTTILWGEKYIKDRIGDIEFMISPKSFYQVNPNQTKQLYD
KALEYADLQGHETVIDAYCGIGTISLFLAQKAKKVYGVEVVGPAVSDAKKNAKLNGLDNT
EFFVGEAEKVFPWWKSQGLDPDVIVVDPPRKGCDENLLQAMIEMKPNKIVYVSCNPSTLA
RDLRILEDGGFETQEVQPVDMFPQTGHIECVTWLKRK
NT seq 1374 nt   +upstreamnt  +downstreamnt
atgtcaaaaccacagccacctgtgcagaaaaatgaaaccgtagagctaacatttgaagac
ttaacacatgaaggcaatggtgtaggcaaagttgatggctatccgctcttcgttccttat
ggtttaccaggggaaaaaggaaaggttaaagtcattaaggtgaaaaagaattttggcttc
ggtaagctccttgaagttgaggagccaagccctgaacgtgtagaaccgccttgtgatgtc
ttttatcaatgtggcggttgtcagattcaacatatgagctatgacatgcagttgaacatg
aaacgtaatcaagtggaaagctctatgcataaagttggtcatctgggtcatgtacccgta
catcctacacttgggatggaaaatccatggcgctaccgcaacaaggtgcaaattcctgtt
ggcaaagacggggatggtcttaaaacaggattctatcgaaaacgaagccatgacatcatc
aacatggatacatgtgtgatccaggatgaaaagaatgaccgtatggtagaagctgttcgc
cgtatcgccgagaaacatggtattcaagcgtatgatgaagaaaagcatcgtggtacgctt
cgtcatattatggtccgtacaggtcaaacaactggcgatgtgatggttgtcatgattacg
aaaactaaagaactacctcataaagatgagattgttgaggaaattcgacaaacctatccg
gatgtaaaatcgatcgttcacaacgtaaaccctaaacgtacgaatgtcgttatgggagac
caaacgacgattctttggggtgaaaaatatattaaagaccgtattggtgacatcgaattc
atgatctcacctaaatcgttctaccaagtaaaccctaatcaaacgaaacaattatatgat
aaggctcttgaatatgccgatctgcaaggacatgaaacggtgattgatgcttactgtggt
atcggaaccatctcgcttttcttagctcaaaaagctaagaaagtgtatggtgtagaggtc
gttggtccagctgtgtcagatgctaagaaaaatgctaagctaaatggcttagataacaca
gaattctttgtgggcgaagctgaaaaagtatttccgtggtggaagtcccaaggccttgac
ccagacgtgattgtagtcgatccacctcgaaaaggctgcgatgaaaacctacttcaggcg
atgattgaaatgaagccgaacaagattgtttatgtttcctgtaatccatctactttagcg
cgtgacttacgtattttagaagatggtgggtttgaaacacaggaagtgcagcctgtcgat
atgtttcctcagacggggcacattgaatgtgtaacgtggctcaaaagaaaatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (13)   
   Pfam (13)   
All databases (21)   

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