KEGG   Polynucleobacter paneuropaeus: DPM16_00885
Entry
DPM16_00885       CDS       T05507                                 
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase
  KO
K01928  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
Organism
poh  Polynucleobacter paneuropaeus
Pathway
poh00300  Lysine biosynthesis
poh00550  Peptidoglycan biosynthesis
poh01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:poh00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00300 Lysine biosynthesis
    DPM16_00885
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    DPM16_00885
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:poh01011]
    DPM16_00885
Enzymes [BR:poh01000]
 6. Ligases
  6.3  Forming carbon-nitrogen bonds
   6.3.2  Acid-D-amino-acid ligases (peptide synthases)
    6.3.2.13  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
     DPM16_00885
Peptidoglycan biosynthesis and degradation proteins [BR:poh01011]
 Precursor biosynthesis
  Amino acid ligase
   DPM16_00885
SSDB
Motif
Pfam: Mur_ligase_M Mur_ligase_C
Other DBs
NCBI-ProteinID: AWW43907
Position
152000..153538
AA seq 512 aa
MRVAVHIEPNHLIEHLQKLVAPAAKIRSDSRQIKLGDIFFAYPVGHGKALRDGRLFIAAA
LESGAKAVVYDPINLNDQFEDHPQCFAVENLAKHAGFLSAQWYGNPSRDLNVIGVTGTNG
KTSITQWIAQALDTPSQRAAVIGTLGAGLSGSLIQTGYTTPDAPTLQTQISELRDQGAKQ
LAIEVSSHALDQGRIAGLDISCAVFSNLTQDHLDYHANMTEYAQAKAKLFNQSALKDVVL
NMDDPFGRELAMQALAKNVVKVWGYALEQSAFQGFEKFGDRLHQLYAKDLVLAGNGYDAS
FIYEGKGSEKLHIPVIGEFNVSNCLAVWGVLLSQGLTISEASKRVSHLKPVIGRMELIHS
NKTGPLVIVDYAHTPDALEKVLKTLRPIADERQGRLWCVFGCGGDRDVGKRPQMGGVAEQ
FSDEVIITSDNPRSEDPNEIIAMINSGMTTQTKQAQIIVDRAAAIMAAVRHATEADIVLV
AGKGHESTQEINGKKFDFSDQEHILLAAGGAI
NT seq 1539 nt   +upstreamnt  +downstreamnt
atgagggtggcagtgcatatagaacccaatcacttgattgagcatttacaaaaattggta
gcacctgccgccaagattagaagtgatagtcgacaaatcaaacttggcgatatctttttt
gcctatcccgttggtcatggcaaagcattgcgagatggtcggctatttattgccgcagct
cttgaaagtggtgcaaaggcagttgtttatgatccgatcaatctgaatgatcaatttgaa
gatcatcctcagtgctttgcagttgagaatttagcaaaacacgccggatttttaagtgca
cagtggtatggcaatcctagccgcgatctgaatgtgattggggttactggtaccaatgga
aagacgagcattacccagtggattgctcaggcgctagataccccttctcagcgcgctgca
gtgattggtacgctaggagcaggattgtcaggctccttaattcagacggggtataccacc
ccggatgccccgacactacagactcagataagtgagttgcgtgaccaaggcgcaaaacaa
ttggctatcgaagtttcctctcatgctttagatcaaggccgaattgcgggattagatatt
agctgcgcagtatttagtaatttgacgcaagatcatttggactaccacgccaatatgact
gagtatgctcaagcaaaagcaaagttatttaatcagagcgccctcaaggatgtcgttttg
aatatggacgatccctttggaagagagcttgcaatgcaggcacttgcgaagaatgtcgta
aaagtttggggctatgcattagagcagagcgcttttcagggctttgaaaaatttggtgat
cgcttgcatcaactgtatgcaaaagatttagtgttagccggaaatggctatgatgcctca
ttcatttacgaaggtaaggggtctgaaaagctacatattcccgtcattggtgaatttaat
gtcagtaattgtttggcagtctggggagtcttgttaagtcaaggtttaacaatctcagaa
gctagtaagcgagttagtcacttaaagcccgtcatcggtcgcatggagttaattcattcc
aataaaactgggccattagtaattgttgattatgcgcatacaccggatgccttagaaaaa
gttctaaaaaccttgcggcctattgctgatgaacgtcaggggaggctctggtgcgtattt
ggttgtggtggcgatcgtgatgttggtaaacggcctcagatgggaggggttgcagagcaa
ttttctgatgaagtaattattaccagcgataaccccagatcagaagatccaaatgaaatc
atcgccatgatcaactctggaatgactacccagaccaaacaagcacaaatcattgtcgat
cgggctgcagcaattatggctgctgtgcgccatgcaacagaagcagacattgttttagtt
gccggtaagggtcatgaatctacgcaagaaatcaatggtaaaaaatttgatttctcagat
caagagcatatcctcttggcagcaggaggagcgatctaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (20)   

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