KEGG   Polaromonas sp. JS666: Bpro_4441
Entry
Bpro_4441         CDS       T00343                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
pol  Polaromonas sp. JS666
Pathway
pol03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pol00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Bpro_4441
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pol03021]
    Bpro_4441
   03400 DNA repair and recombination proteins [BR:pol03400]
    Bpro_4441
Enzymes [BR:pol01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Bpro_4441
Transcription machinery [BR:pol03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Bpro_4441
DNA repair and recombination proteins [BR:pol03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Bpro_4441
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C
Other DBs
NCBI-ProteinID: ABE46328
UniProt: Q123G4
Position
complement(4690162..4694388)
AA seq 1408 aa
MKSLLDLFKQFTPDEHFDAIKIGMASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVTDPGMTPLKKFSIMSEDDYDAKRKEYGDEYVAKM
GAEGIKDLLEGLDLDVEIDKLRNDLTGSEIKIKKNAKRLKLMEAFKKSGIKPEWMVLDVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITMGPTLK
LHQCGLPKLMALELFKPFIFSRLEAMGIATTIKAAKKEVESGTPVVWDILEEVIKEHPVM
LNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSVEAQMEART
LMLASNNILFPANGEPSIVPSQDVVLGLYYTTRDRTNGKGEGLVFSDTGEVRRAFDAGEL
DLNARISVRLTEWTKNKETGEFIPSTKLWETTGGRALLSEILPKGLPFSNINKALKKKEI
SKLINVSFRKCGLKETVVFADKLLQSGFRLATKAGISICIDDMLVPKEKHDIISRAQKEV
KEIEQQYVSGLVTSGERYNKVVDIWGKSGDEVSKVMMAQLSKEKVIDRHGKEVEQESFNS
IYMMADSGARGSAAQIRQVAGMRGLMAKPDGSIIETPITANFREGLNVLEYFISTHGARK
GLADTALKTANSGYLTRRLCDVVQDLVVTEDDCGTQEGSLMRAIVEGGEVIESLRERILG
RTAVEDVLHPENRSVLAKAGAMLDEDLIDELEAAGVDEVKVRTALTCETRFGLCAKCYGR
DLGRGGLINIGEAVGIIAAQSIGEPGTQLTMRTFHIGGAASRAAIASSVEAKSNGVIGFN
APMRYVTNGKGELVVIARSGEIVIHDEHGRERERHKVPYGATLTVKADQTIKAGAILANW
DPLTRPIITEFAGKVLFENVEEGVTVAKQVDDVTGLSTLVVIDPKRRGATKVIRPQVKLI
DATGNEVKIPGTDHSVTIGFQVGALVQVRDGQDVGPGEVLARIPVEGQKTRDITGGLPRV
AELFEARTPKDKGTLAEMTGTVSFGKETKGKVRLQITDPDGKVWEDLVPKEKNILVHEGQ
VVNKGESIVDGPADPQDILRLLGMEELARYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVVVENVGDSSYIAGEQVERSAMLDANDALRAEGKIPATFSNLLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAYHEARKAKDLMDDAERRA
IAEAEAAELEAATATAPADAGGDSPATE
NT seq 4227 nt   +upstreamnt  +downstreamnt
atgaaatcattactcgacctgttcaagcaattcacgccggatgagcatttcgatgccatc
aagatcggcatggcctcgcccgagaagatccgttcgtggtctttcggcgaagtcaaaaag
cctgaaaccatcaactaccgcaccttcaagccagagcgcgacggtcttttttgcgccaag
atctttggccccatcaaggactacgaatgcctgtgcggcaagtacaagcgcctcaagcac
cgcggcgtcatctgcgagaagtgcggcgttgaagtcacgcagaccaaggtccgccgtgag
cgcatgggtcacatcgacctggccgctccctgcgcgcacatctggttcctgaagtcgctg
ccgtcgcgtctgggcctggtgctcgacatgacgctgcgcgacatcgagcgcgtgctgtac
ttcgaagcttacgtggtgaccgaccccggcatgaccccgctgaagaaattcagcatcatg
tcggaagacgactacgacgccaagcgcaaggaatacggtgatgagtacgtcgccaagatg
ggcgccgaaggcatcaaggacctgctcgaagggctcgacctcgacgtcgagatcgacaag
ctgcgcaacgacctgaccggttccgaaatcaagatcaagaaaaacgccaagcgtttgaaa
ttgatggaagcgttcaagaagtccggcatcaagcccgagtggatggtgctggacgtgctg
cctgtgctgccgccggacctgcgtccgctggtgccgctggacggcggccgcttcgcgacc
tccgacctgaacgacctgtaccgccgcgtcatcaaccgcaacagccgcctgcgccgtctg
ctggagctcaaggctcccgagatcattgcccgcaatgaaaagcgcatgctgcaggaagcg
gtggattcgctgctggacaacggccgccgtggcaaggccatgacgggcgccaacaagcgc
gcgctgaagtcgctggccgacatgatcaagggcaagtcaggccgtttccgccagaacttg
ctgggcaagcgcgtcgactactccggccgttccgtgatcaccatgggcccgacgctcaag
ctgcaccagtgcggcttgcccaagctgatggcgctcgagctgttcaagcctttcatcttc
tcgcgtctcgaagccatgggcatcgcgaccaccatcaaggcggccaagaaggaagtcgaa
tccggcacgccagtggtgtgggacatcctggaagaggttatcaaggagcaccccgtgatg
ctgaaccgtgcgcctacgctgcaccgtctcggtatccaggcctttgaacccatcctgatc
gaaggcaaggccatccagctgcacccgctcgtctgctcggccttcaacgccgactttgac
ggtgaccagatggccgttcacgtgccgctgtcggtggaagcgcagatggaagcccgcacg
ctgatgctggcttcgaacaacatcctgttcccggccaacggcgagccctccattgttccg
tcgcaagacgtggtgctgggcctgtactacacgacccgcgaccgtaccaacggcaagggt
gaaggcctcgtgttctcggacaccggtgaggtgcgccgtgcattcgatgcgggcgaactg
gacctgaacgccaggatcagcgtgcgcctgaccgaatggaccaagaacaaggagaccggc
gagttcatcccgtcgaccaagctgtgggaaaccaccggtggccgtgcgctgctgtctgaa
atcctgcccaagggcctgcctttctctaacatcaacaaggcgttgaagaaaaaggaaatc
tccaagctgatcaacgtgtctttccgcaagtgcggcctgaaagagacggtggtgtttgcc
gacaagctgctgcagtcgggcttccgcctggccaccaaggccggcatctccatctgtatc
gacgacatgctggtgcccaaggaaaagcacgacatcatttcgcgtgcccagaaggaagtc
aaagagatcgagcagcagtatgtctcgggcctggtgacatccggcgagcgctacaacaag
gtggttgacatctggggcaagtccggcgacgaagtctccaaggtcatgatggcccagctt
tcgaaagaaaaagtcatcgaccgccacggcaaggaagtcgagcaggaatccttcaactcc
atctacatgatggccgactccggcgcccgcggttctgccgcgcagattcgccaggtggcc
ggtatgcggggtctgatggccaagcctgacggctccatcatcgagacgccgattaccgcg
aacttccgcgaaggcctgaacgtgctggagtacttcatctccacccacggtgcccgtaag
ggtttggctgacaccgcgctgaaaacggccaactccggctacctgacgcgtcgcctgtgc
gacgtggtgcaggatctggtggtgaccgaagacgactgcggcacgcaagagggctcgctg
atgcgcgccatcgtcgagggtggtgaggtgatcgaatcgctgcgcgaacgtatcctcggc
cgcaccgcggtggaagatgtgctgcatcccgagaaccgctcggttctggccaaagccggt
gccatgctggacgaagacctgatcgacgaactcgaagcggccggcgtcgacgaagtgaaa
gtgcgcacggccctgacctgcgaaacccgcttcggcctgtgcgccaagtgctacggccgc
gatctgggccgcggtggcctgatcaacatcggtgaggcggtcggtatcatcgccgcccag
tcgattggtgagcccggcacgcagctgaccatgcgtaccttccacatcggcggtgctgcg
tcgcgtgcggcgattgcctccagcgtcgaagccaagtccaacggcgtgatcggtttcaat
gccccgatgcgttatgtgaccaacggcaagggcgaactggtggtgattgcccgttccggc
gagatcgtcatccatgacgagcacggccgcgagcgtgagcgtcacaaggtgccgtacggt
gccacattgacggtcaaggccgaccagaccatcaaggctggcgccatcctggccaactgg
gatccgctgacgcgccccatcattaccgaattcgccggcaaggtgctgttcgagaatgtg
gaagaaggcgtcaccgtggccaagcaggttgacgatgtgacgggtctgtccaccctggtg
gtgatcgatccgaaacgccgcggcgcgaccaaggtgattcgtccccaggtcaaactgatc
gacgcgaccggcaacgaagtcaagatccccggcaccgatcactcggtgacgatcggcttc
caggtgggtgcgctggttcaggtgcgcgacggccaggacgtgggccccggcgaagtgctg
gcccgtatcccggtcgaaggccagaagacccgcgacattaccggcggtctgccgcgcgtg
gccgagctgttcgaagcccgtacgccgaaagacaagggcacgctggccgagatgaccggt
accgtgtcgttcggtaaagagaccaaaggcaaggttcgcctgcagatcaccgatccggac
ggcaaagtctgggaagacctcgtgcccaaggagaagaacattctcgtgcacgaaggccag
gtggtgaacaagggcgagtcgattgtggacggcccggccgacccgcaagacatcctgcgt
ttgctgggcatggaagagctggcccgctacatcgtcgacgaagtgcaggacgtttaccgc
ctgcagggcgtgaagatcaacgacaagcacatcgaagtgattgttcgccagatgctgcgc
cgtgtcgtcgtcgaaaacgtgggcgactccagctacatcgccggtgagcaggttgagcgt
tcggccatgctggatgccaacgacgccttgcgcgccgagggcaagatcccggcaaccttc
agcaacctgctgctcggtatcaccaaggcctcgctgtcgaccgattcgttcatttccgcg
gcttccttccaggaaaccacccgcgtgctcaccgaggctgccatcatgggcaagcgcgac
gagctgcgcggtctgaaggaaaacgtgatcgtcggccgcctgattccagccggtaccggc
atggcctaccacgaggcacgcaaagccaaggacctgatggacgacgccgagcgccgtgcc
attgccgaagctgaagccgctgaactggaggctgcgacagccacggcacctgccgatgcg
ggcggcgacagtcctgcaaccgagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (6)   
   Pfam (6)   
All databases (31)   

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