KEGG   Polaribacter sp. MED152: MED152_13454
Entry
MED152_13454      CDS       T02533                                 
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
pom  Polaribacter sp. MED152
Pathway
pom03030  DNA replication
pom03410  Base excision repair
pom03420  Nucleotide excision repair
pom03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pom00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MED152_13454 (ligA)
   03410 Base excision repair
    MED152_13454 (ligA)
   03420 Nucleotide excision repair
    MED152_13454 (ligA)
   03430 Mismatch repair
    MED152_13454 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pom03032]
    MED152_13454 (ligA)
   03400 DNA repair and recombination proteins [BR:pom03400]
    MED152_13454 (ligA)
Enzymes [BR:pom01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     MED152_13454 (ligA)
DNA replication proteins [BR:pom03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     MED152_13454 (ligA)
DNA repair and recombination proteins [BR:pom03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     MED152_13454 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     MED152_13454 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     MED152_13454 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      MED152_13454 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT BRCT_2 DNA_ligase_A_M AphA_like 5_3_exonuc Auto_anti-p27 HHH HNOB TF_Zn_Ribbon
Other DBs
NCBI-ProteinID: EAQ41047
UniProt: A2U468
Position
2952697..2954694
AA seq 665 aa
MNVQERIIELRNELNRHNYNYYVLDNATISDFEFDIKLKELDKLEQENPLFFDANSPTQR
VGGTITKNFNTVVHKNRMYSLDNSYSKDDLLDWEKRIQKILGTTEISYTCELKYDGASIN
LTYENGQFIKAVTRGDGFQGDEVTNNIKTILSIPLSIQDDFVSNFEMRGEIILPLDGFNK
MNQERVANGEEEYRNPRNTASGSLKLQDSAEVAKRPLDCLLYQVVTEERKYKTHFESLEQ
ARKVGFKVPKTIKLVNSIDEVFEFVNLWDTKRQDLPYETDGIVIKVNNLQQQEELGYTSK
APRWAIAYKFKAEQEATLLNEITYQVGRTGAITPVANLDPVQLAGTTVKRASLHNADQIE
KLDVRINDTVFVEKGGEIIPKIVGVDFSKRPENSEPTVYATNCPECGTELVRTAGDAKHY
CPNEFGCAPQITGRIQHFISRKAMDIDGLGGETVDLLRKEGLIQNYADLYELTVEKVLPL
ERIAEKSAKNLINGIEKSKEIPFEKVLFALGIRFVGETVAKKLAKHFKSIDNLMAADFET
LVAVDEIGDRIAQSIIDFSSNLTSIQLVNRLKEAGLQLSVSAESLENQTDKLKGQIFVVS
GVFHQMSRTELKKAIEDNGGKVSSSISKKTNFIVAGDNMGPSKLAKAETLGIQIISEQDF
INKIA
NT seq 1998 nt   +upstreamnt  +downstreamnt
atgaatgttcaagaaagaatcatagaattacgtaacgaactaaatagacacaattacaat
tactatgttttagataatgctacgatttctgattttgaatttgatattaaattaaaggag
ttagataagttagagcaggagaaccctctttttttcgatgccaattcaccaacgcaaaga
gtaggaggtactatcaccaaaaactttaatactgtagttcataaaaacagaatgtattct
ttagataattcttattctaaagatgatctgttagattgggaaaaacgaattcaaaaaata
ttagggactacagaaatttcatacacttgcgaactaaaatacgatggtgcatctattaac
ctaacttatgaaaatggtcagtttataaaagcagtaactagaggtgatggctttcaaggg
gatgaagtaactaataatataaaaaccattttatctattcctttaagtattcaagatgac
tttgtaagtaattttgaaatgagaggtgaaatcattttacctttagatggtttcaataaa
atgaaccaagaaagagttgcgaatggagaagaagaatacagaaacccaagaaatacagca
agtgggagtttaaaattacaagacagtgcagaagttgcaaaaagacctttagactgtttg
ttgtatcaagtagttacagaagagcgcaaatacaaaacccattttgaaagtttagaacaa
gcaagaaaagtcggttttaaagttcctaaaaccataaaacttgtaaattcaatagatgaa
gtttttgaatttgttaatctttgggatactaaaagacaagatttaccatatgaaacagat
ggtattgttattaaagtaaataatttgcagcagcaagaagagttgggctatacttctaaa
gctccaagatgggctattgcttataaatttaaagcagaacaagaagctaccttactaaac
gaaattacatatcaagttggtagaacaggtgcaattactccagttgccaatttagatcca
gtgcaattggcaggtacaactgttaaaagagcatctttgcacaatgcagatcaaattgaa
aagttagatgttagaataaatgatactgtttttgtagaaaaaggtggagaaataattcca
aaaattgttggggttgatttttctaaacgtccagaaaattctgagccaacagtatatgca
accaattgccctgaatgtggtacagaattggttagaactgcaggtgatgcaaaacactac
tgtccaaacgagtttggttgtgctccacaaattacaggaagaattcaacattttatttct
agaaaagcaatggatattgatggtttaggaggagaaactgtagatttactgagaaaagag
ggtttaattcagaattatgcagatctttatgagttaactgtagagaaagtgttaccatta
gaaagaattgcagaaaagtctgccaagaatctaattaacggtattgaaaaatcaaaagaa
attccgtttgaaaaagtattatttgctttaggaattcgttttgtaggagaaactgtggct
aaaaagttagccaagcattttaaatctatagacaatttaatggctgcagatttcgaaact
ttggtggctgtagacgagattggagatcgaattgcacagagtattatcgatttttcatca
aacttaactagtatacaacttgtaaatcgcttaaaagaggcaggattgcaattatcggtt
tcagctgagagtttagaaaatcaaacagataaacttaaaggacaaatatttgtggtttct
ggagtatttcatcaaatgagtagaacagaattgaaaaaggctatagaagataatggaggt
aaagtaagctcttctatttctaaaaagaccaattttattgtggctggtgataatatgggg
ccatcgaaactagcaaaagccgaaactctaggcatacaaataatatcagagcaagatttt
atcaataaaattgcttag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (69)   
   KEGG ORTHOLOGY (1)   
   RefGene (66)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (15)   
   Pfam (15)   
All databases (101)   

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