KEGG   Populus trichocarpa (black cottonwood): 18100233
Entry
18100233          CDS       T01077                                 
Name
(RefSeq) probable DNA helicase MCM8 isoform X1
  KO
K10737  DNA helicase MCM8 [EC:5.6.2.4]
Organism
pop  Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:pop00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pop03032]
    18100233
Enzymes [BR:pop01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     18100233
DNA replication proteins [BR:pop03032]
 Eukaryotic type
  DNA Replication Initiation Factors
   Other initiation factors
    18100233
SSDB
Motif
Pfam: MCM MCM_OB MCM_lid AAA_5 Mg_chelatase AAA_3 Sigma54_activat NTPase_1 AAA_16 AAA AAA_30
Other DBs
NCBI-GeneID: 18100233
NCBI-ProteinID: XP_024459462
Position
6:10753875..10762210
AA seq 794 aa
MYGTHGESASRKKQHHHYASDDVVNILATYCPSNELAVDEEKLMLTCHLIHFFSNTPPGE
DLASQVKDKNGAYYLSIDFQQFQNIRELEEFYATLEEKPKVALSCMGAAVHKVFLSKCED
NFLDDGMKINIRLHNYPESMIALKNLKAAYIDKLVSVRGSVVKVSNVRPLVVQMNFNCAK
CKYSILRIFPDGKFSPPTVCSLNGCKSRTFNPIRSSARAIDFQKIRLQELLRSEDHEEGR
VPRTVECELTEDLVDACIPGDVVTVTGIIKTFNSNLDTGGGKSKNKNQGFYYLYLEVVSI
KNSKLQSTSDNLQDSKCNARATELSDLFSFSPRDLEFIVKFSEEHGSDIFRQILQSICPS
IYGHELVKAGITLALFGGVRKHSMDPNKVPVRGDIHVIIVGDPGLGKSQLLQAAAAVCPR
GIYVCGNATTNAGLTVAVVKDAKTSDYAFEAGAMVLADSGLCCIDEFDKMSAEHQSLLEA
MEQQCVSVAKAGLLASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFIL
LDKPDEVLDKRVSDHIISLHAGYGEYSQAAKKLRTASLHGGIDMSVRNGSLVSRLRLDPK
KDADFAPLPGPLLRKYIAYARTYVFPRMSKPAAEILQKFYLQLRDHNTSADCTPITARQL
ESLVRLAEARARLELREEVTAQDATDVVEIMKESLYDKYVDEHGVVDFGRSGGMSQQKEA
KRFLSALNRQSELQRKDTFSISEIYSLADRIGLRVPDIDTFVDNLNSAGYLLKKGPKTFQ
VLTSSYSRSQSSRG
NT seq 2385 nt   +upstreamnt  +downstreamnt
atgtacggaacacatggagagagcgcgagcagaaagaagcaacaccaccactacgcaagc
gacgacgtcgttaacatattggccacatactgcccttcaaacgagttggctgtcgacgaa
gaaaagctgatgctcacttgtcatctcattcacttctttagcaatactcctcctggtgag
gatctcgcttctcaggtaaaggataaaaatggagcgtactatttgtctattgattttcaa
caatttcaaaatatacgtgaacttgaggaattctatgcaactttagaagagaaacctaaa
gtagctctctcgtgcatgggggctgcagttcacaaggtgtttttgagcaaatgcgaggac
aacttcttagatgatggcatgaagataaacatccgtcttcacaactaccctgaatctatg
attgctttgaagaacctaaaagcagcatatattgacaagcttgtatctgtgcgggggagt
gtggttaaagttagcaatgtgaggccactagtggtacaaatgaatttcaactgtgcgaag
tgcaaatacagcattttacgtatatttcctgatggaaaattttcaccaccaactgtttgc
tctttaaatgggtgcaagagcagaactttcaatccaattagatcttctgctagagccata
gattttcagaaaataaggctacaggaattactaagatctgaagatcatgaagaaggacgg
gtgccacgaacagtggaatgcgaattgactgaagatcttgttgatgcatgcatccctgga
gatgtggtgactgtcactggcattataaaaacattcaatagcaatttggatacaggagga
ggaaaatcaaaaaacaaaaatcaaggattttattatttgtatctagaagtggtctctata
aaaaactcgaagttgcaatctacatctgacaatttgcaagattccaaatgtaatgcaaga
gctacagaactgtctgatctgttctcattctctccacgagatctggaatttattgtgaag
ttctcagaagaacatggttcagatatcttccggcaaatacttcagtcaatatgtccatct
atctatggacacgagcttgttaaagcggggataacattagcactgtttggaggtgtccgg
aagcattcaatggatccgaataaggtccctgtcagaggagacatccatgttataattgtt
ggtgatcctggactaggcaagagtcaattactgcaagcagcagcagctgtttgtccacgt
ggcatttatgtgtgtggcaacgctacaactaatgctggcctcactgtagctgtggtcaag
gatgccaagacaagtgactatgcttttgaggctggggcaatggtgctcgcagacagtgga
ctctgttgtattgatgaatttgataaaatgtctgcagaacatcagtctcttctagaagct
atggagcagcaatgtgtctctgttgctaaggctggtctccttgcaagtttatcagcacga
acttctgttttagcagcggcaaatcctgttggtggtcattacaaccgtgcaaagacagtg
aatgagaacttgaaaatgagtgctgctcttctctcacggtttgatttggttttcatatta
cttgacaaacctgatgaagtgctggataaacgagtctcagatcacatcatatcacttcat
gctggatatggagaatattcacaagcagccaaaaagttacggacagcatcactgcatgga
ggcatagatatgagtgtaagaaatggatccttggtttcacggttaagactggacccaaag
aaggatgctgattttgctccattacctggtccacttcttcgcaaatatattgcttatgct
agaacttatgtctttcctaggatgtcaaaaccagcagcagaaatactacagaagttctac
ttgcagcttagagaccacaatacatcagctgattgtacaccaataacagcgaggcaactg
gaaagtttggtgaggctggctgaagctcgagctcggctagagttgagagaagaagtaaca
gcccaagatgcaacggatgtggttgaaataatgaaagaatccctatatgataaatatgta
gatgagcacggcgttgtagattttggtcgaagtggggggatgagtcaacaaaaggaagca
aaacggtttctaagtgccctcaataggcagtcagagttgcagcgaaaagataccttttca
atttctgaaatatacagtttagcagacagaattggcctaagagttccagatatcgacacg
tttgtggataacttaaacagtgctggttatctactcaagaagggaccgaagacatttcag
gtgctaacatcttcttactcccggagtcagtcatcaagggggtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (11)   
   Pfam (11)   
All databases (27)   

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